Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6747 | 5' | -53.5 | NC_001875.2 | + | 62393 | 0.75 | 0.485407 |
Target: 5'- uGCUgAGuCGCCGCGGguuuuauugcgUGGGCAAGCGu -3' miRNA: 3'- -CGAgUC-GCGGUGUCa----------ACCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 51937 | 0.66 | 0.915472 |
Target: 5'- aGCgugCGGCGCUACu-UUGGGCGcGACGu -3' miRNA: 3'- -CGa--GUCGCGGUGucAACCCGU-UUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 30493 | 0.67 | 0.902761 |
Target: 5'- aCUCGGCGUC-CAGUUuGGCG-ACAAa -3' miRNA: 3'- cGAGUCGCGGuGUCAAcCCGUuUGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 93280 | 0.68 | 0.85042 |
Target: 5'- uGCg-GGCgGCCACgGGUUGGGCAAAa-- -3' miRNA: 3'- -CGagUCG-CGGUG-UCAACCCGUUUguu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 77055 | 0.68 | 0.833405 |
Target: 5'- uGCU-AGUGCCGCccGGUUGGGaAAACGAu -3' miRNA: 3'- -CGAgUCGCGGUG--UCAACCCgUUUGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 105969 | 0.7 | 0.768 |
Target: 5'- cUUgGGCGCCGCAa-UGGGCAGGCu- -3' miRNA: 3'- cGAgUCGCGGUGUcaACCCGUUUGuu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 68994 | 0.7 | 0.747962 |
Target: 5'- uGUggAGUGCCGCGG--GGGCAAGCAc -3' miRNA: 3'- -CGagUCGCGGUGUCaaCCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 74061 | 0.71 | 0.704527 |
Target: 5'- uGCUCGgcguggauugugcGCGCCccucgcaaaaccuGCAGUUGGGCAgcGACGc -3' miRNA: 3'- -CGAGU-------------CGCGG-------------UGUCAACCCGU--UUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 61507 | 0.71 | 0.703475 |
Target: 5'- gGCUCGGCGCCGCAGUccgcgugcucgcgcUuGGCGGcCAu -3' miRNA: 3'- -CGAGUCGCGGUGUCA--------------AcCCGUUuGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 36422 | 0.71 | 0.685503 |
Target: 5'- gGC-CGGCGCCGCGGUgucGGGCugguGCu- -3' miRNA: 3'- -CGaGUCGCGGUGUCAa--CCCGuu--UGuu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 11110 | 0.72 | 0.664183 |
Target: 5'- uCUCGGCGCCGCAGcUGcaauuGGCAAuucGCGAa -3' miRNA: 3'- cGAGUCGCGGUGUCaAC-----CCGUU---UGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 42907 | 0.73 | 0.58916 |
Target: 5'- gGCUguGCGCCGCAugccgUGGGCGucGCAGu -3' miRNA: 3'- -CGAguCGCGGUGUca---ACCCGUu-UGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 37987 | 0.74 | 0.51576 |
Target: 5'- cGCUCAGCGCCgACAaccGUUGGuGCAuuACGGg -3' miRNA: 3'- -CGAGUCGCGG-UGU---CAACC-CGUu-UGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 71143 | 0.74 | 0.505553 |
Target: 5'- cCUCAGCGCgGCcgcGUUGGGCAuuACAGa -3' miRNA: 3'- cGAGUCGCGgUGu--CAACCCGUu-UGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 102049 | 0.68 | 0.830782 |
Target: 5'- cGC-CAGCGCCcgcACAGUcccgcacgaucauuUgGGGCGAGCAc -3' miRNA: 3'- -CGaGUCGCGG---UGUCA--------------A-CCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 86922 | 0.69 | 0.824592 |
Target: 5'- cGCUgaAGCGCCGCcuagAGUgcgaGGGCGAGCc- -3' miRNA: 3'- -CGAg-UCGCGGUG----UCAa---CCCGUUUGuu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 4731 | 0.69 | 0.797033 |
Target: 5'- aGCU--GUGCC-CAGUUGGGCcAGCAu -3' miRNA: 3'- -CGAguCGCGGuGUCAACCCGuUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 59928 | 0.69 | 0.787506 |
Target: 5'- cGCUCGccgacGCGCaCGCccagUGGGCGGACAAg -3' miRNA: 3'- -CGAGU-----CGCG-GUGuca-ACCCGUUUGUU- -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 115678 | 0.75 | 0.475479 |
Target: 5'- -gUCGGUGCaCAC-GUUGGGCAGGCAu -3' miRNA: 3'- cgAGUCGCG-GUGuCAACCCGUUUGUu -5' |
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6747 | 5' | -53.5 | NC_001875.2 | + | 22871 | 0.66 | 0.939749 |
Target: 5'- uGCgucCAGCaGCUugucggccaauucuuGCAGUUGGGCGGAUu- -3' miRNA: 3'- -CGa--GUCG-CGG---------------UGUCAACCCGUUUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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