miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6748 5' -58.6 NC_001875.2 + 77273 0.66 0.801214
Target:  5'- -uUCGGUGCAGguggACCCGcaaaCGGaGCa -3'
miRNA:   3'- ucAGCCACGUCa---UGGGCuaccGCC-CG- -5'
6748 5' -58.6 NC_001875.2 + 55502 0.66 0.792308
Target:  5'- aGGUCcuGGUggcGCAGcaccUGCUCGAUGGCG-GCu -3'
miRNA:   3'- -UCAG--CCA---CGUC----AUGGGCUACCGCcCG- -5'
6748 5' -58.6 NC_001875.2 + 108014 0.66 0.792308
Target:  5'- -cUUGGUGgGGUACCUGGUcuacuCGGGCc -3'
miRNA:   3'- ucAGCCACgUCAUGGGCUAcc---GCCCG- -5'
6748 5' -58.6 NC_001875.2 + 77707 0.66 0.78326
Target:  5'- uGUCGGUGCcGUA-CCGAc--CGGGCc -3'
miRNA:   3'- uCAGCCACGuCAUgGGCUaccGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 58121 0.66 0.77408
Target:  5'- aGGUCGGUGUAGcGCuCUGccGGCGcaGCg -3'
miRNA:   3'- -UCAGCCACGUCaUG-GGCuaCCGCc-CG- -5'
6748 5' -58.6 NC_001875.2 + 127133 0.66 0.764776
Target:  5'- gAG-CGcGUGUGGaACCCcgcGGCGGGCa -3'
miRNA:   3'- -UCaGC-CACGUCaUGGGcuaCCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 124459 0.66 0.755357
Target:  5'- cGUCGc-GCAaccgcGUGgCCGAUccGGCGGGCa -3'
miRNA:   3'- uCAGCcaCGU-----CAUgGGCUA--CCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 28822 0.66 0.755357
Target:  5'- gAGcCGGUGaccgucagGGUGgCCGAcacggacGGCGGGCa -3'
miRNA:   3'- -UCaGCCACg-------UCAUgGGCUa------CCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 57135 0.67 0.736209
Target:  5'- --gUGGUGUAGUGCgUGGgcgccaacGGCGGGUc -3'
miRNA:   3'- ucaGCCACGUCAUGgGCUa-------CCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 65797 0.67 0.736209
Target:  5'- cGUCGGcgcGCGGUGCCUGc--GCGGcGCc -3'
miRNA:   3'- uCAGCCa--CGUCAUGGGCuacCGCC-CG- -5'
6748 5' -58.6 NC_001875.2 + 63716 0.67 0.696923
Target:  5'- uGUCGGUcGCGG----CGAcGGCGGGCg -3'
miRNA:   3'- uCAGCCA-CGUCauggGCUaCCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 43 0.68 0.676926
Target:  5'- cAGUUGGUGCucaACUCGgcGGCGGcgGCg -3'
miRNA:   3'- -UCAGCCACGucaUGGGCuaCCGCC--CG- -5'
6748 5' -58.6 NC_001875.2 + 98139 0.68 0.676926
Target:  5'- -uUCGGUGg---ACCCGAUcaGCGGGCg -3'
miRNA:   3'- ucAGCCACgucaUGGGCUAc-CGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 106022 0.68 0.676926
Target:  5'- gGG-CGuUGCAGUGCUC---GGCGGGCg -3'
miRNA:   3'- -UCaGCcACGUCAUGGGcuaCCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 88111 0.68 0.66687
Target:  5'- --aUGGUGCAGUACUUu---GCGGGCa -3'
miRNA:   3'- ucaGCCACGUCAUGGGcuacCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 49691 0.69 0.616337
Target:  5'- cGUCGGccagcaaaGCGG-ACUCGA-GGUGGGCg -3'
miRNA:   3'- uCAGCCa-------CGUCaUGGGCUaCCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 79806 0.69 0.606235
Target:  5'- cGUCGGgccGCuugaacGUGCCCGGcaUGGUGGuGCc -3'
miRNA:   3'- uCAGCCa--CGu-----CAUGGGCU--ACCGCC-CG- -5'
6748 5' -58.6 NC_001875.2 + 79125 0.69 0.576069
Target:  5'- uGUCGGcgGCGG-GCgCCGc-GGCGGGCu -3'
miRNA:   3'- uCAGCCa-CGUCaUG-GGCuaCCGCCCG- -5'
6748 5' -58.6 NC_001875.2 + 89509 0.7 0.555152
Target:  5'- uGGgaaaGGUGCAGUuggcgucGCgCCGAUaGGCGGGa -3'
miRNA:   3'- -UCag--CCACGUCA-------UG-GGCUA-CCGCCCg -5'
6748 5' -58.6 NC_001875.2 + 111321 0.7 0.536421
Target:  5'- uGUCGuaaauGUugCUGGUGGCGGGCg -3'
miRNA:   3'- uCAGCcacguCAugGGCUACCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.