Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 105884 | 1.12 | 0.000936 |
Target: 5'- gAGUCGGUGCAGUACCCGAUGGCGGGCg -3' miRNA: 3'- -UCAGCCACGUCAUGGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 121280 | 0.79 | 0.15978 |
Target: 5'- uGUCGc-GCAGcUGCCUGAUGGUGGGCg -3' miRNA: 3'- uCAGCcaCGUC-AUGGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 11815 | 0.79 | 0.17662 |
Target: 5'- cGUCGGUGUuuguGGUcGCgCCGGUGGCGGGg -3' miRNA: 3'- uCAGCCACG----UCA-UG-GGCUACCGCCCg -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 84318 | 0.74 | 0.350452 |
Target: 5'- uAG-CGGcgccUGCGGUACCCGGagcggcgagUGGCGGaGCg -3' miRNA: 3'- -UCaGCC----ACGUCAUGGGCU---------ACCGCC-CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 56440 | 0.74 | 0.35822 |
Target: 5'- gGGUCGGacaCGGUGaggCCGGUGGCGGGg -3' miRNA: 3'- -UCAGCCac-GUCAUg--GGCUACCGCCCg -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 7365 | 0.74 | 0.35822 |
Target: 5'- --gCGGUGCAGUGCCCGccGGaucGGCc -3' miRNA: 3'- ucaGCCACGUCAUGGGCuaCCgc-CCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 102149 | 0.73 | 0.382242 |
Target: 5'- uGGUCGGUGguGUacaGCUCGuUGGCguuccaacuGGGCg -3' miRNA: 3'- -UCAGCCACguCA---UGGGCuACCG---------CCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 32464 | 0.73 | 0.398841 |
Target: 5'- cGcCGGUGCGGcgcuuugGCCacuUGGCGGGCg -3' miRNA: 3'- uCaGCCACGUCa------UGGgcuACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 110623 | 0.71 | 0.46961 |
Target: 5'- --gUGGUGCGGUuuaaacacaACCUGGUGGCGcuGGCc -3' miRNA: 3'- ucaGCCACGUCA---------UGGGCUACCGC--CCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 92451 | 0.71 | 0.482651 |
Target: 5'- cAGUCGGUGCacaggcacgAGUGgCCgcaggguaggcacgaGAcGGCGGGCg -3' miRNA: 3'- -UCAGCCACG---------UCAUgGG---------------CUaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 111321 | 0.7 | 0.536421 |
Target: 5'- uGUCGuaaauGUugCUGGUGGCGGGCg -3' miRNA: 3'- uCAGCcacguCAugGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 89509 | 0.7 | 0.555152 |
Target: 5'- uGGgaaaGGUGCAGUuggcgucGCgCCGAUaGGCGGGa -3' miRNA: 3'- -UCag--CCACGUCA-------UG-GGCUA-CCGCCCg -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 79125 | 0.69 | 0.576069 |
Target: 5'- uGUCGGcgGCGG-GCgCCGc-GGCGGGCu -3' miRNA: 3'- uCAGCCa-CGUCaUG-GGCuaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 79806 | 0.69 | 0.606235 |
Target: 5'- cGUCGGgccGCuugaacGUGCCCGGcaUGGUGGuGCc -3' miRNA: 3'- uCAGCCa--CGu-----CAUGGGCU--ACCGCC-CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 49691 | 0.69 | 0.616337 |
Target: 5'- cGUCGGccagcaaaGCGG-ACUCGA-GGUGGGCg -3' miRNA: 3'- uCAGCCa-------CGUCaUGGGCUaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 88111 | 0.68 | 0.66687 |
Target: 5'- --aUGGUGCAGUACUUu---GCGGGCa -3' miRNA: 3'- ucaGCCACGUCAUGGGcuacCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 43 | 0.68 | 0.676926 |
Target: 5'- cAGUUGGUGCucaACUCGgcGGCGGcgGCg -3' miRNA: 3'- -UCAGCCACGucaUGGGCuaCCGCC--CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 106022 | 0.68 | 0.676926 |
Target: 5'- gGG-CGuUGCAGUGCUC---GGCGGGCg -3' miRNA: 3'- -UCaGCcACGUCAUGGGcuaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 98139 | 0.68 | 0.676926 |
Target: 5'- -uUCGGUGg---ACCCGAUcaGCGGGCg -3' miRNA: 3'- ucAGCCACgucaUGGGCUAc-CGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 63716 | 0.67 | 0.696923 |
Target: 5'- uGUCGGUcGCGG----CGAcGGCGGGCg -3' miRNA: 3'- uCAGCCA-CGUCauggGCUaCCGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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