Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 65797 | 0.67 | 0.736209 |
Target: 5'- cGUCGGcgcGCGGUGCCUGc--GCGGcGCc -3' miRNA: 3'- uCAGCCa--CGUCAUGGGCuacCGCC-CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 57135 | 0.67 | 0.736209 |
Target: 5'- --gUGGUGUAGUGCgUGGgcgccaacGGCGGGUc -3' miRNA: 3'- ucaGCCACGUCAUGgGCUa-------CCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 124459 | 0.66 | 0.755357 |
Target: 5'- cGUCGc-GCAaccgcGUGgCCGAUccGGCGGGCa -3' miRNA: 3'- uCAGCcaCGU-----CAUgGGCUA--CCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 28822 | 0.66 | 0.755357 |
Target: 5'- gAGcCGGUGaccgucagGGUGgCCGAcacggacGGCGGGCa -3' miRNA: 3'- -UCaGCCACg-------UCAUgGGCUa------CCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 127133 | 0.66 | 0.764776 |
Target: 5'- gAG-CGcGUGUGGaACCCcgcGGCGGGCa -3' miRNA: 3'- -UCaGC-CACGUCaUGGGcuaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 58121 | 0.66 | 0.77408 |
Target: 5'- aGGUCGGUGUAGcGCuCUGccGGCGcaGCg -3' miRNA: 3'- -UCAGCCACGUCaUG-GGCuaCCGCc-CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 77707 | 0.66 | 0.78326 |
Target: 5'- uGUCGGUGCcGUA-CCGAc--CGGGCc -3' miRNA: 3'- uCAGCCACGuCAUgGGCUaccGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 55502 | 0.66 | 0.792308 |
Target: 5'- aGGUCcuGGUggcGCAGcaccUGCUCGAUGGCG-GCu -3' miRNA: 3'- -UCAG--CCA---CGUC----AUGGGCUACCGCcCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 108014 | 0.66 | 0.792308 |
Target: 5'- -cUUGGUGgGGUACCUGGUcuacuCGGGCc -3' miRNA: 3'- ucAGCCACgUCAUGGGCUAcc---GCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 77273 | 0.66 | 0.801214 |
Target: 5'- -uUCGGUGCAGguggACCCGcaaaCGGaGCa -3' miRNA: 3'- ucAGCCACGUCa---UGGGCuaccGCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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