Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 58121 | 0.66 | 0.77408 |
Target: 5'- aGGUCGGUGUAGcGCuCUGccGGCGcaGCg -3' miRNA: 3'- -UCAGCCACGUCaUG-GGCuaCCGCc-CG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 88111 | 0.68 | 0.66687 |
Target: 5'- --aUGGUGCAGUACUUu---GCGGGCa -3' miRNA: 3'- ucaGCCACGUCAUGGGcuacCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 49691 | 0.69 | 0.616337 |
Target: 5'- cGUCGGccagcaaaGCGG-ACUCGA-GGUGGGCg -3' miRNA: 3'- uCAGCCa-------CGUCaUGGGCUaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 111321 | 0.7 | 0.536421 |
Target: 5'- uGUCGuaaauGUugCUGGUGGCGGGCg -3' miRNA: 3'- uCAGCcacguCAugGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 92451 | 0.71 | 0.482651 |
Target: 5'- cAGUCGGUGCacaggcacgAGUGgCCgcaggguaggcacgaGAcGGCGGGCg -3' miRNA: 3'- -UCAGCCACG---------UCAUgGG---------------CUaCCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 32464 | 0.73 | 0.398841 |
Target: 5'- cGcCGGUGCGGcgcuuugGCCacuUGGCGGGCg -3' miRNA: 3'- uCaGCCACGUCa------UGGgcuACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 11815 | 0.79 | 0.17662 |
Target: 5'- cGUCGGUGUuuguGGUcGCgCCGGUGGCGGGg -3' miRNA: 3'- uCAGCCACG----UCA-UG-GGCUACCGCCCg -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 121280 | 0.79 | 0.15978 |
Target: 5'- uGUCGc-GCAGcUGCCUGAUGGUGGGCg -3' miRNA: 3'- uCAGCcaCGUC-AUGGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 105884 | 1.12 | 0.000936 |
Target: 5'- gAGUCGGUGCAGUACCCGAUGGCGGGCg -3' miRNA: 3'- -UCAGCCACGUCAUGGGCUACCGCCCG- -5' |
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6748 | 5' | -58.6 | NC_001875.2 | + | 77707 | 0.66 | 0.78326 |
Target: 5'- uGUCGGUGCcGUA-CCGAc--CGGGCc -3' miRNA: 3'- uCAGCCACGuCAUgGGCUaccGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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