Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 49691 | 0.69 | 0.616337 |
Target: 5'- cGUCGGccagcaaaGCGG-ACUCGA-GGUGGGCg -3' miRNA: 3'- uCAGCCa-------CGUCaUGGGCUaCCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 92451 | 0.71 | 0.482651 |
Target: 5'- cAGUCGGUGCacaggcacgAGUGgCCgcaggguaggcacgaGAcGGCGGGCg -3' miRNA: 3'- -UCAGCCACG---------UCAUgGG---------------CUaCCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 32464 | 0.73 | 0.398841 |
Target: 5'- cGcCGGUGCGGcgcuuugGCCacuUGGCGGGCg -3' miRNA: 3'- uCaGCCACGUCa------UGGgcuACCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 11815 | 0.79 | 0.17662 |
Target: 5'- cGUCGGUGUuuguGGUcGCgCCGGUGGCGGGg -3' miRNA: 3'- uCAGCCACG----UCA-UG-GGCUACCGCCCg -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 121280 | 0.79 | 0.15978 |
Target: 5'- uGUCGc-GCAGcUGCCUGAUGGUGGGCg -3' miRNA: 3'- uCAGCcaCGUC-AUGGGCUACCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 105884 | 1.12 | 0.000936 |
Target: 5'- gAGUCGGUGCAGUACCCGAUGGCGGGCg -3' miRNA: 3'- -UCAGCCACGUCAUGGGCUACCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 58121 | 0.66 | 0.77408 |
Target: 5'- aGGUCGGUGUAGcGCuCUGccGGCGcaGCg -3' miRNA: 3'- -UCAGCCACGUCaUG-GGCuaCCGCc-CG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 127133 | 0.66 | 0.764776 |
Target: 5'- gAG-CGcGUGUGGaACCCcgcGGCGGGCa -3' miRNA: 3'- -UCaGC-CACGUCaUGGGcuaCCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 124459 | 0.66 | 0.755357 |
Target: 5'- cGUCGc-GCAaccgcGUGgCCGAUccGGCGGGCa -3' miRNA: 3'- uCAGCcaCGU-----CAUgGGCUA--CCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 65797 | 0.67 | 0.736209 |
Target: 5'- cGUCGGcgcGCGGUGCCUGc--GCGGcGCc -3' miRNA: 3'- uCAGCCa--CGUCAUGGGCuacCGCC-CG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 88111 | 0.68 | 0.66687 |
Target: 5'- --aUGGUGCAGUACUUu---GCGGGCa -3' miRNA: 3'- ucaGCCACGUCAUGGGcuacCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 77707 | 0.66 | 0.78326 |
Target: 5'- uGUCGGUGCcGUA-CCGAc--CGGGCc -3' miRNA: 3'- uCAGCCACGuCAUgGGCUaccGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 57135 | 0.67 | 0.736209 |
Target: 5'- --gUGGUGUAGUGCgUGGgcgccaacGGCGGGUc -3' miRNA: 3'- ucaGCCACGUCAUGgGCUa-------CCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 28822 | 0.66 | 0.755357 |
Target: 5'- gAGcCGGUGaccgucagGGUGgCCGAcacggacGGCGGGCa -3' miRNA: 3'- -UCaGCCACg-------UCAUgGGCUa------CCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 111321 | 0.7 | 0.536421 |
Target: 5'- uGUCGuaaauGUugCUGGUGGCGGGCg -3' miRNA: 3'- uCAGCcacguCAugGGCUACCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 77273 | 0.66 | 0.801214 |
Target: 5'- -uUCGGUGCAGguggACCCGcaaaCGGaGCa -3' miRNA: 3'- ucAGCCACGUCa---UGGGCuaccGCC-CG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 108014 | 0.66 | 0.792308 |
Target: 5'- -cUUGGUGgGGUACCUGGUcuacuCGGGCc -3' miRNA: 3'- ucAGCCACgUCAUGGGCUAcc---GCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 55502 | 0.66 | 0.792308 |
Target: 5'- aGGUCcuGGUggcGCAGcaccUGCUCGAUGGCG-GCu -3' miRNA: 3'- -UCAG--CCA---CGUC----AUGGGCUACCGCcCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 63716 | 0.67 | 0.696923 |
Target: 5'- uGUCGGUcGCGG----CGAcGGCGGGCg -3' miRNA: 3'- uCAGCCA-CGUCauggGCUaCCGCCCG- -5' |
|||||||
6748 | 5' | -58.6 | NC_001875.2 | + | 79125 | 0.69 | 0.576069 |
Target: 5'- uGUCGGcgGCGG-GCgCCGc-GGCGGGCu -3' miRNA: 3'- uCAGCCa-CGUCaUG-GGCuaCCGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home