Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6749 | 3' | -50.6 | NC_001875.2 | + | 105368 | 1.07 | 0.010473 |
Target: 5'- cGAAAACUACGACCGCGAGGCCGUUUUg -3' miRNA: 3'- -CUUUUGAUGCUGGCGCUCCGGCAAAA- -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 128004 | 0.73 | 0.789911 |
Target: 5'- uGGAGGCUGCGGCCGCGccGgCGUg-- -3' miRNA: 3'- -CUUUUGAUGCUGGCGCucCgGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 16238 | 0.7 | 0.89839 |
Target: 5'- --uGACUGCGG-CGaCGAGGCCGUc-- -3' miRNA: 3'- cuuUUGAUGCUgGC-GCUCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 99158 | 0.7 | 0.905092 |
Target: 5'- aGAAAuCUACGACCGgGAGGaCGg--- -3' miRNA: 3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 99134 | 0.7 | 0.905092 |
Target: 5'- aGAAAuCUACGACCGgGAGGaCGg--- -3' miRNA: 3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 129337 | 0.7 | 0.905092 |
Target: 5'- cGAcAACUacGCGGCCGCauGAcGGCCGUUa- -3' miRNA: 3'- -CUuUUGA--UGCUGGCG--CU-CCGGCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 16008 | 0.7 | 0.923617 |
Target: 5'- --cGGCUGCugGGCCGCGAGGUCa---- -3' miRNA: 3'- cuuUUGAUG--CUGGCGCUCCGGcaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 104123 | 0.69 | 0.92926 |
Target: 5'- aGGAucuACUGCGcGCCGUGGGGCCc---- -3' miRNA: 3'- -CUUu--UGAUGC-UGGCGCUCCGGcaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 14723 | 0.69 | 0.92926 |
Target: 5'- --uGACaACGAgCGCGAGGCCa---- -3' miRNA: 3'- cuuUUGaUGCUgGCGCUCCGGcaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 89502 | 0.69 | 0.934636 |
Target: 5'- ---cGCUGCGACUGCGcuuccgccugGGGCCGc--- -3' miRNA: 3'- cuuuUGAUGCUGGCGC----------UCCGGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 9630 | 0.69 | 0.934636 |
Target: 5'- -uAAGCUGCGugCGCGc-GCCGUg-- -3' miRNA: 3'- cuUUUGAUGCugGCGCucCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 120739 | 0.69 | 0.934636 |
Target: 5'- --cAGCUGCGgcGCCGagaCGGGGCCGUg-- -3' miRNA: 3'- cuuUUGAUGC--UGGC---GCUCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 40998 | 0.68 | 0.953497 |
Target: 5'- uGAAcAACgucaACGGCCGCGuGGUCGUg-- -3' miRNA: 3'- -CUU-UUGa---UGCUGGCGCuCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 101145 | 0.68 | 0.953497 |
Target: 5'- cGAAAACgauuuCGACCaCGuGGCCGUg-- -3' miRNA: 3'- -CUUUUGau---GCUGGcGCuCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 19857 | 0.68 | 0.957565 |
Target: 5'- cAAGACU-CGGCCGCGucgcggcgcgGGcGCCGUUUg -3' miRNA: 3'- cUUUUGAuGCUGGCGC----------UC-CGGCAAAa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 54566 | 0.68 | 0.961384 |
Target: 5'- ---uACUGCG-CCGCGGcGGCCGc--- -3' miRNA: 3'- cuuuUGAUGCuGGCGCU-CCGGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 23170 | 0.68 | 0.964957 |
Target: 5'- -cGGGCacgGCGGCUGCGGgcacGGCCGUUg- -3' miRNA: 3'- cuUUUGa--UGCUGGCGCU----CCGGCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 34893 | 0.68 | 0.968292 |
Target: 5'- aAGGACUACGAgCGCGAGaucaaggcgcGCCaGUUUUu -3' miRNA: 3'- cUUUUGAUGCUgGCGCUC----------CGG-CAAAA- -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 30183 | 0.68 | 0.968292 |
Target: 5'- uGAAAGCcgugauuugGCGccguucGCCGCGAcGGCCGUUg- -3' miRNA: 3'- -CUUUUGa--------UGC------UGGCGCU-CCGGCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 19708 | 0.68 | 0.968292 |
Target: 5'- cGAGGugUACGcGCUGUgggccGAGGCCGUa-- -3' miRNA: 3'- -CUUUugAUGC-UGGCG-----CUCCGGCAaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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