miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 3' -50.6 NC_001875.2 + 16238 0.7 0.89839
Target:  5'- --uGACUGCGG-CGaCGAGGCCGUc-- -3'
miRNA:   3'- cuuUUGAUGCUgGC-GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 914 0.66 0.990254
Target:  5'- cGAAccGGCUuaACGACUGCaGGGCCGc--- -3'
miRNA:   3'- -CUU--UUGA--UGCUGGCGcUCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 15838 0.66 0.990254
Target:  5'- cGAGACUGCaACCGCGAGaCCa---- -3'
miRNA:   3'- cUUUUGAUGcUGGCGCUCcGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 39161 0.66 0.988854
Target:  5'- ----uUUGgGGCCGCGAGGCgGg--- -3'
miRNA:   3'- cuuuuGAUgCUGGCGCUCCGgCaaaa -5'
6749 3' -50.6 NC_001875.2 + 39261 0.66 0.985591
Target:  5'- aGAAACUGCGcgaCGCGGGGCgGc--- -3'
miRNA:   3'- cUUUUGAUGCug-GCGCUCCGgCaaaa -5'
6749 3' -50.6 NC_001875.2 + 96937 0.66 0.983707
Target:  5'- ------gGCGACCGCGGcGGCCa---- -3'
miRNA:   3'- cuuuugaUGCUGGCGCU-CCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 124959 0.67 0.981643
Target:  5'- gGAAAGCUcuguuUGACCGCGucGCCGc--- -3'
miRNA:   3'- -CUUUUGAu----GCUGGCGCucCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 55715 0.67 0.979389
Target:  5'- ----uCUACGGCCGCGcaaauacGGCCGa--- -3'
miRNA:   3'- cuuuuGAUGCUGGCGCu------CCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 100801 0.67 0.971395
Target:  5'- --cGACgUACGGCCGCGccGGGUCGg--- -3'
miRNA:   3'- cuuUUG-AUGCUGGCGC--UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 30183 0.68 0.968292
Target:  5'- uGAAAGCcgugauuugGCGccguucGCCGCGAcGGCCGUUg- -3'
miRNA:   3'- -CUUUUGa--------UGC------UGGCGCU-CCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 16008 0.7 0.923617
Target:  5'- --cGGCUGCugGGCCGCGAGGUCa---- -3'
miRNA:   3'- cuuUUGAUG--CUGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 104123 0.69 0.92926
Target:  5'- aGGAucuACUGCGcGCCGUGGGGCCc---- -3'
miRNA:   3'- -CUUu--UGAUGC-UGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 40998 0.68 0.953497
Target:  5'- uGAAcAACgucaACGGCCGCGuGGUCGUg-- -3'
miRNA:   3'- -CUU-UUGa---UGCUGGCGCuCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 54566 0.68 0.961384
Target:  5'- ---uACUGCG-CCGCGGcGGCCGc--- -3'
miRNA:   3'- cuuuUGAUGCuGGCGCU-CCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 34893 0.68 0.968292
Target:  5'- aAGGACUACGAgCGCGAGaucaaggcgcGCCaGUUUUu -3'
miRNA:   3'- cUUUUGAUGCUgGCGCUC----------CGG-CAAAA- -5'
6749 3' -50.6 NC_001875.2 + 19708 0.68 0.968292
Target:  5'- cGAGGugUACGcGCUGUgggccGAGGCCGUa-- -3'
miRNA:   3'- -CUUUugAUGC-UGGCG-----CUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 100985 0.66 0.99012
Target:  5'- ---cGCUGCaGGCCGCGGcguuugcGGCgGUUUUg -3'
miRNA:   3'- cuuuUGAUG-CUGGCGCU-------CCGgCAAAA- -5'
6749 3' -50.6 NC_001875.2 + 128004 0.73 0.789911
Target:  5'- uGGAGGCUGCGGCCGCGccGgCGUg-- -3'
miRNA:   3'- -CUUUUGAUGCUGGCGCucCgGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 99134 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 99158 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.