Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6749 | 3' | -50.6 | NC_001875.2 | + | 14723 | 0.69 | 0.92926 |
Target: 5'- --uGACaACGAgCGCGAGGCCa---- -3' miRNA: 3'- cuuUUGaUGCUgGCGCUCCGGcaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 19416 | 0.67 | 0.981643 |
Target: 5'- uGAuuACUgcuuGCGACUGCGgcgaAGGCCGg--- -3' miRNA: 3'- -CUuuUGA----UGCUGGCGC----UCCGGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 36410 | 0.66 | 0.983707 |
Target: 5'- gGAcGACacggGCG-CCGCGAGGCCu---- -3' miRNA: 3'- -CUuUUGa---UGCuGGCGCUCCGGcaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 100985 | 0.66 | 0.99012 |
Target: 5'- ---cGCUGCaGGCCGCGGcguuugcGGCgGUUUUg -3' miRNA: 3'- cuuuUGAUG-CUGGCGCU-------CCGgCAAAA- -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 101145 | 0.68 | 0.953497 |
Target: 5'- cGAAAACgauuuCGACCaCGuGGCCGUg-- -3' miRNA: 3'- -CUUUUGau---GCUGGcGCuCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 105368 | 1.07 | 0.010473 |
Target: 5'- cGAAAACUACGACCGCGAGGCCGUUUUg -3' miRNA: 3'- -CUUUUGAUGCUGGCGCUCCGGCAAAA- -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 128004 | 0.73 | 0.789911 |
Target: 5'- uGGAGGCUGCGGCCGCGccGgCGUg-- -3' miRNA: 3'- -CUUUUGAUGCUGGCGCucCgGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 99134 | 0.7 | 0.905092 |
Target: 5'- aGAAAuCUACGACCGgGAGGaCGg--- -3' miRNA: 3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 99158 | 0.7 | 0.905092 |
Target: 5'- aGAAAuCUACGACCGgGAGGaCGg--- -3' miRNA: 3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 86377 | 0.67 | 0.981643 |
Target: 5'- -uAGACgcGCGGCUGCGGGcGCCGa--- -3' miRNA: 3'- cuUUUGa-UGCUGGCGCUC-CGGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 98875 | 0.68 | 0.968292 |
Target: 5'- ---cGCUAaUGugCGCGGGcGCCGUUUc -3' miRNA: 3'- cuuuUGAU-GCugGCGCUC-CGGCAAAa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 68771 | 0.68 | 0.968292 |
Target: 5'- cGAggUUGCGgaACCGCGcAGGUCGUUc- -3' miRNA: 3'- cUUuuGAUGC--UGGCGC-UCCGGCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 9630 | 0.69 | 0.934636 |
Target: 5'- -uAAGCUGCGugCGCGc-GCCGUg-- -3' miRNA: 3'- cuUUUGAUGCugGCGCucCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 90611 | 0.67 | 0.974273 |
Target: 5'- ------cGCGACgGcCGAGGCCGUg-- -3' miRNA: 3'- cuuuugaUGCUGgC-GCUCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 89502 | 0.69 | 0.934636 |
Target: 5'- ---cGCUGCGACUGCGcuuccgccugGGGCCGc--- -3' miRNA: 3'- cuuuUGAUGCUGGCGC----------UCCGGCaaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 23170 | 0.68 | 0.964957 |
Target: 5'- -cGGGCacgGCGGCUGCGGgcacGGCCGUUg- -3' miRNA: 3'- cuUUUGa--UGCUGGCGCU----CCGGCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 39027 | 0.67 | 0.979389 |
Target: 5'- -----aUGCGACCGCGGcgcGGCaCGUUa- -3' miRNA: 3'- cuuuugAUGCUGGCGCU---CCG-GCAAaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 88750 | 0.67 | 0.981643 |
Target: 5'- cAAAACUGCGGCgaguuCGAGGUCGUg-- -3' miRNA: 3'- cUUUUGAUGCUGgc---GCUCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 120739 | 0.69 | 0.934636 |
Target: 5'- --cAGCUGCGgcGCCGagaCGGGGCCGUg-- -3' miRNA: 3'- cuuUUGAUGC--UGGC---GCUCCGGCAaaa -5' |
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6749 | 3' | -50.6 | NC_001875.2 | + | 19857 | 0.68 | 0.957565 |
Target: 5'- cAAGACU-CGGCCGCGucgcggcgcgGGcGCCGUUUg -3' miRNA: 3'- cUUUUGAuGCUGGCGC----------UC-CGGCAAAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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