miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 108952 0.67 0.97746
Target:  5'- gCAGGAuGCGGCCgugUGCGAUagcgaugcgcugcaGCACGGUg -3'
miRNA:   3'- -GUUUU-UGCUGGa--GCGCUG--------------UGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 125176 0.67 0.977212
Target:  5'- -cGAAGCGGCCguugcccagauugCGCG-UGCugGGCAc -3'
miRNA:   3'- guUUUUGCUGGa------------GCGCuGUGugCCGU- -5'
6749 5' -51.4 NC_001875.2 + 113561 0.67 0.975681
Target:  5'- -cGAAGCGGCCUugUGCGAC-CGCGuGUc -3'
miRNA:   3'- guUUUUGCUGGA--GCGCUGuGUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 6951 0.67 0.975681
Target:  5'- ----uGCGugCgcCGCGACAucgcCACGGCGc -3'
miRNA:   3'- guuuuUGCugGa-GCGCUGU----GUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 93197 0.67 0.975681
Target:  5'- -----cCGGCCagCGCGcaAUACGCGGCGu -3'
miRNA:   3'- guuuuuGCUGGa-GCGC--UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 100617 0.67 0.975681
Target:  5'- uCAAGAAgGGCUggCGCGACACuCGcGCc -3'
miRNA:   3'- -GUUUUUgCUGGa-GCGCUGUGuGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 61626 0.67 0.975418
Target:  5'- gCGAGAACugaucgcuaacguGGCC-CGCGACACGCcGCu -3'
miRNA:   3'- -GUUUUUG-------------CUGGaGCGCUGUGUGcCGu -5'
6749 5' -51.4 NC_001875.2 + 46600 0.67 0.972964
Target:  5'- --cGAGCGcggaacccGCgCUCGuCGACAUGCGGCGc -3'
miRNA:   3'- guuUUUGC--------UG-GAGC-GCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 54868 0.67 0.972964
Target:  5'- aCuuGAACGugUuguUCGCG-CACugGGCu -3'
miRNA:   3'- -GuuUUUGCugG---AGCGCuGUGugCCGu -5'
6749 5' -51.4 NC_001875.2 + 47670 0.67 0.972108
Target:  5'- aCGGAcGCGGCCgcggCGCGccgcgcguuucucaACGCGgGGCAa -3'
miRNA:   3'- -GUUUuUGCUGGa---GCGC--------------UGUGUgCCGU- -5'
6749 5' -51.4 NC_001875.2 + 118006 0.67 0.970034
Target:  5'- uCGAAAACGcCCUcuuccgguacCGCGACcaguGCgACGGCAa -3'
miRNA:   3'- -GUUUUUGCuGGA----------GCGCUG----UG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 72242 0.67 0.970034
Target:  5'- cCAAAGcgccCGugCUCGCG-CACGuCGGCc -3'
miRNA:   3'- -GUUUUu---GCugGAGCGCuGUGU-GCCGu -5'
6749 5' -51.4 NC_001875.2 + 127883 0.67 0.970034
Target:  5'- gCAAGcGCGGCgUCGUuguuGACACGCuGCAg -3'
miRNA:   3'- -GUUUuUGCUGgAGCG----CUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 118185 0.67 0.969422
Target:  5'- aAAAGugGGCUguuuguguugaGCGGCgGCGCGGCAa -3'
miRNA:   3'- gUUUUugCUGGag---------CGCUG-UGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 77408 0.67 0.966884
Target:  5'- ---uAACGACCgccacgcgcuguUCgGCGACAagaGCGGCAu -3'
miRNA:   3'- guuuUUGCUGG------------AG-CGCUGUg--UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 125336 0.67 0.966884
Target:  5'- gGAcgGCGGCCagCGUGuugGCGCGGCAc -3'
miRNA:   3'- gUUuuUGCUGGa-GCGCug-UGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 85516 0.67 0.966884
Target:  5'- cCAAAAgcgGCGGCCaCGUGaucaGCACGCGGUu -3'
miRNA:   3'- -GUUUU---UGCUGGaGCGC----UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 71182 0.67 0.966884
Target:  5'- --uGGACGACgaCGaCGACACAaaaUGGCAc -3'
miRNA:   3'- guuUUUGCUGgaGC-GCUGUGU---GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 49618 0.67 0.965895
Target:  5'- --cAAGCGGCUUCcuggacuuccagcgGCGACACgaGCGGCc -3'
miRNA:   3'- guuUUUGCUGGAG--------------CGCUGUG--UGCCGu -5'
6749 5' -51.4 NC_001875.2 + 114482 0.67 0.965561
Target:  5'- gUAGAGAUGugCggcagcacucugaCGCGGuCGCGCGGCGg -3'
miRNA:   3'- -GUUUUUGCugGa------------GCGCU-GUGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.