miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 86079 0.66 0.982429
Target:  5'- ---uGACGACCUCGgugucgggcuCGGCGCcgcguuuACGGCu -3'
miRNA:   3'- guuuUUGCUGGAGC----------GCUGUG-------UGCCGu -5'
6749 5' -51.4 NC_001875.2 + 96908 0.66 0.98138
Target:  5'- aCGAAAACGugCUugaagcccuguuguuUgGCGAC-CGCGGCGg -3'
miRNA:   3'- -GUUUUUGCugGA---------------G-CGCUGuGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 44525 0.66 0.980507
Target:  5'- ----uGCGGCUUCguucacagcaGCGuCGCGCGGCGu -3'
miRNA:   3'- guuuuUGCUGGAG----------CGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 96030 0.66 0.980507
Target:  5'- uGGGGugGACUacguUCGCGGCaaGCGCGuGCGc -3'
miRNA:   3'- gUUUUugCUGG----AGCGCUG--UGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 4986 0.66 0.980507
Target:  5'- -cAAAGCG-CCUCGCuGCuguGCGGCAc -3'
miRNA:   3'- guUUUUGCuGGAGCGcUGug-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 110077 0.66 0.980507
Target:  5'- gCAGAGACG-CUgCGCGuggaggccgccACGCGCGGCc -3'
miRNA:   3'- -GUUUUUGCuGGaGCGC-----------UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 70316 0.66 0.980507
Target:  5'- ---uGAUGGCCgccaagCGCGAgCACGCGGa- -3'
miRNA:   3'- guuuUUGCUGGa-----GCGCU-GUGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 37613 0.66 0.980507
Target:  5'- aCGGcgGCGugCUCGcCGACgACAUGGg- -3'
miRNA:   3'- -GUUuuUGCugGAGC-GCUG-UGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 16913 0.66 0.980507
Target:  5'- aCGAcgGCGcggGCCUCGUGuuugaGCGCAuCGGCGc -3'
miRNA:   3'- -GUUuuUGC---UGGAGCGC-----UGUGU-GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114545 0.67 0.978192
Target:  5'- aCAucGGCGGCgCUCaCGACGCuccaguGCGGCGg -3'
miRNA:   3'- -GUuuUUGCUG-GAGcGCUGUG------UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 126570 0.67 0.978192
Target:  5'- -----uCGGCCaUCGCGugGCAguuuUGGCAc -3'
miRNA:   3'- guuuuuGCUGG-AGCGCugUGU----GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 18252 0.67 0.978192
Target:  5'- aCAAAGACGcGCuCUUGUuuaccgucGACACGCGGUc -3'
miRNA:   3'- -GUUUUUGC-UG-GAGCG--------CUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 30983 0.67 0.978192
Target:  5'- aCGAAuACGACCUgGCcGCAgACGaGCu -3'
miRNA:   3'- -GUUUuUGCUGGAgCGcUGUgUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 16072 0.67 0.978192
Target:  5'- uCGAGGACGG-CUCGCGGCgguuugaaauGCGCuGCAa -3'
miRNA:   3'- -GUUUUUGCUgGAGCGCUG----------UGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 9771 0.67 0.978192
Target:  5'- ------aGGCCaaGCG-CACGCGGCAc -3'
miRNA:   3'- guuuuugCUGGagCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 131387 0.67 0.978192
Target:  5'- gCAAGcGCGAacaCUCGCcgguGCACgACGGCAc -3'
miRNA:   3'- -GUUUuUGCUg--GAGCGc---UGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 71136 0.67 0.978192
Target:  5'- --uGGGCGGCCUcagCGCGGCcgcgUugGGCAu -3'
miRNA:   3'- guuUUUGCUGGA---GCGCUGu---GugCCGU- -5'
6749 5' -51.4 NC_001875.2 + 57337 0.67 0.978192
Target:  5'- ----uGCGGCagCGCuGCGCGCGGCGa -3'
miRNA:   3'- guuuuUGCUGgaGCGcUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 102732 0.67 0.978192
Target:  5'- gGAuAGCGACCUuaaagucugCGCGGCcuuuGCACGaGCGc -3'
miRNA:   3'- gUUuUUGCUGGA---------GCGCUG----UGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 76478 0.67 0.978192
Target:  5'- -cAAAACGGCCgcggaCGaCGACGagGCGGCGc -3'
miRNA:   3'- guUUUUGCUGGa----GC-GCUGUg-UGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.