miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 86079 0.66 0.982429
Target:  5'- ---uGACGACCUCGgugucgggcuCGGCGCcgcguuuACGGCu -3'
miRNA:   3'- guuuUUGCUGGAGC----------GCUGUG-------UGCCGu -5'
6749 5' -51.4 NC_001875.2 + 98467 0.66 0.982633
Target:  5'- -cGAGACGGCCUgcuucuuuUGCGACugcCGCGuGCGu -3'
miRNA:   3'- guUUUUGCUGGA--------GCGCUGu--GUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 62944 0.66 0.987971
Target:  5'- -uGAcuCGACaCUCGCcGgACGCGGCGu -3'
miRNA:   3'- guUUuuGCUG-GAGCGcUgUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 70316 0.66 0.980507
Target:  5'- ---uGAUGGCCgccaagCGCGAgCACGCGGa- -3'
miRNA:   3'- guuuUUGCUGGa-----GCGCU-GUGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 96030 0.66 0.980507
Target:  5'- uGGGGugGACUacguUCGCGGCaaGCGCGuGCGc -3'
miRNA:   3'- gUUUUugCUGG----AGCGCUG--UGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 96908 0.66 0.98138
Target:  5'- aCGAAAACGugCUugaagcccuguuguuUgGCGAC-CGCGGCGg -3'
miRNA:   3'- -GUUUUUGCugGA---------------G-CGCUGuGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 21318 0.66 0.98458
Target:  5'- aAGAAGCG-CCagGUGGCcCGCGGCc -3'
miRNA:   3'- gUUUUUGCuGGagCGCUGuGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 76190 0.66 0.98458
Target:  5'- -----gUGA--UCGCGGCACAUGGCGc -3'
miRNA:   3'- guuuuuGCUggAGCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 23158 0.66 0.986356
Target:  5'- gAAGGGCGGCUgCG-GGCACGgCGGCu -3'
miRNA:   3'- gUUUUUGCUGGaGCgCUGUGU-GCCGu -5'
6749 5' -51.4 NC_001875.2 + 47670 0.67 0.972108
Target:  5'- aCGGAcGCGGCCgcggCGCGccgcgcguuucucaACGCGgGGCAa -3'
miRNA:   3'- -GUUUuUGCUGGa---GCGC--------------UGUGUgCCGU- -5'
6749 5' -51.4 NC_001875.2 + 100617 0.67 0.975681
Target:  5'- uCAAGAAgGGCUggCGCGACACuCGcGCc -3'
miRNA:   3'- -GUUUUUgCUGGa-GCGCUGUGuGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 93197 0.67 0.975681
Target:  5'- -----cCGGCCagCGCGcaAUACGCGGCGu -3'
miRNA:   3'- guuuuuGCUGGa-GCGC--UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 6951 0.67 0.975681
Target:  5'- ----uGCGugCgcCGCGACAucgcCACGGCGc -3'
miRNA:   3'- guuuuUGCugGa-GCGCUGU----GUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 113561 0.67 0.975681
Target:  5'- -cGAAGCGGCCUugUGCGAC-CGCGuGUc -3'
miRNA:   3'- guUUUUGCUGGA--GCGCUGuGUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 16072 0.67 0.978192
Target:  5'- uCGAGGACGG-CUCGCGGCgguuugaaauGCGCuGCAa -3'
miRNA:   3'- -GUUUUUGCUgGAGCGCUG----------UGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 57337 0.67 0.978192
Target:  5'- ----uGCGGCagCGCuGCGCGCGGCGa -3'
miRNA:   3'- guuuuUGCUGgaGCGcUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 131387 0.67 0.978192
Target:  5'- gCAAGcGCGAacaCUCGCcgguGCACgACGGCAc -3'
miRNA:   3'- -GUUUuUGCUg--GAGCGc---UGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114545 0.67 0.978192
Target:  5'- aCAucGGCGGCgCUCaCGACGCuccaguGCGGCGg -3'
miRNA:   3'- -GUuuUUGCUG-GAGcGCUGUG------UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 9771 0.67 0.978192
Target:  5'- ------aGGCCaaGCG-CACGCGGCAc -3'
miRNA:   3'- guuuuugCUGGagCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 108952 0.67 0.97746
Target:  5'- gCAGGAuGCGGCCgugUGCGAUagcgaugcgcugcaGCACGGUg -3'
miRNA:   3'- -GUUUU-UGCUGGa--GCGCUG--------------UGUGCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.