miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 37893 0.66 0.98458
Target:  5'- ---cAGCGGCUugcuggCGCGGCAC-UGGCAc -3'
miRNA:   3'- guuuUUGCUGGa-----GCGCUGUGuGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 76190 0.66 0.98458
Target:  5'- -----gUGA--UCGCGGCACAUGGCGc -3'
miRNA:   3'- guuuuuGCUggAGCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 16913 0.66 0.980507
Target:  5'- aCGAcgGCGcggGCCUCGUGuuugaGCGCAuCGGCGc -3'
miRNA:   3'- -GUUuuUGC---UGGAGCGC-----UGUGU-GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 44525 0.66 0.980507
Target:  5'- ----uGCGGCUUCguucacagcaGCGuCGCGCGGCGu -3'
miRNA:   3'- guuuuUGCUGGAG----------CGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 70316 0.66 0.980507
Target:  5'- ---uGAUGGCCgccaagCGCGAgCACGCGGa- -3'
miRNA:   3'- guuuUUGCUGGa-----GCGCU-GUGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 76863 0.66 0.982633
Target:  5'- gAAAGGCGcCCagcgcgaGCGACGCGucCGGCAa -3'
miRNA:   3'- gUUUUUGCuGGag-----CGCUGUGU--GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 21318 0.66 0.98458
Target:  5'- aAGAAGCG-CCagGUGGCcCGCGGCc -3'
miRNA:   3'- gUUUUUGCuGGagCGCUGuGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 4986 0.66 0.980507
Target:  5'- -cAAAGCG-CCUCGCuGCuguGCGGCAc -3'
miRNA:   3'- guUUUUGCuGGAGCGcUGug-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 86079 0.66 0.982429
Target:  5'- ---uGACGACCUCGgugucgggcuCGGCGCcgcguuuACGGCu -3'
miRNA:   3'- guuuUUGCUGGAGC----------GCUGUG-------UGCCGu -5'
6749 5' -51.4 NC_001875.2 + 127278 0.66 0.982633
Target:  5'- ----uGCGGCugCUCGCGuuGCugGCGGCc -3'
miRNA:   3'- guuuuUGCUG--GAGCGC--UGugUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 110077 0.66 0.980507
Target:  5'- gCAGAGACG-CUgCGCGuggaggccgccACGCGCGGCc -3'
miRNA:   3'- -GUUUUUGCuGGaGCGC-----------UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 96030 0.66 0.980507
Target:  5'- uGGGGugGACUacguUCGCGGCaaGCGCGuGCGc -3'
miRNA:   3'- gUUUUugCUGG----AGCGCUG--UGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 53848 0.66 0.98458
Target:  5'- ---cAAUGGUCUCGCG-CACGCuGGCAc -3'
miRNA:   3'- guuuUUGCUGGAGCGCuGUGUG-CCGU- -5'
6749 5' -51.4 NC_001875.2 + 49440 0.66 0.987971
Target:  5'- ----uACGAaaCCgCGCGGCugACGGUg -3'
miRNA:   3'- guuuuUGCU--GGaGCGCUGugUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 98467 0.66 0.982633
Target:  5'- -cGAGACGGCCUgcuucuuuUGCGACugcCGCGuGCGu -3'
miRNA:   3'- guUUUUGCUGGA--------GCGCUGu--GUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 96908 0.66 0.98138
Target:  5'- aCGAAAACGugCUugaagcccuguuguuUgGCGAC-CGCGGCGg -3'
miRNA:   3'- -GUUUUUGCugGA---------------G-CGCUGuGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 37613 0.66 0.980507
Target:  5'- aCGGcgGCGugCUCGcCGACgACAUGGg- -3'
miRNA:   3'- -GUUuuUGCugGAGC-GCUG-UGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 121934 0.66 0.98458
Target:  5'- ----uGCGGCCacaucuUUGUGguGCGCGCGGCAg -3'
miRNA:   3'- guuuuUGCUGG------AGCGC--UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 62944 0.66 0.987971
Target:  5'- -uGAcuCGACaCUCGCcGgACGCGGCGu -3'
miRNA:   3'- guUUuuGCUG-GAGCGcUgUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 78154 0.66 0.986356
Target:  5'- --cAAACGugUUgGCGcUGCGCGGCGc -3'
miRNA:   3'- guuUUUGCugGAgCGCuGUGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.