miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 44694 0.69 0.93307
Target:  5'- -----gUGACCUCGCugccCACGCGGUAc -3'
miRNA:   3'- guuuuuGCUGGAGCGcu--GUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 61524 0.7 0.903689
Target:  5'- ----cGCGugCUCGCGcUugGCGGCc -3'
miRNA:   3'- guuuuUGCugGAGCGCuGugUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 73901 0.7 0.903689
Target:  5'- ----cACGACCgcguuUCGCGACACAUuGCGu -3'
miRNA:   3'- guuuuUGCUGG-----AGCGCUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 6608 0.7 0.910078
Target:  5'- ---cAAUGACCgCGCcGCACGCGGUg -3'
miRNA:   3'- guuuUUGCUGGaGCGcUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 122140 0.7 0.910078
Target:  5'- ----cGCGGCCggCGCG-CACgACGGCGa -3'
miRNA:   3'- guuuuUGCUGGa-GCGCuGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 42690 0.7 0.916212
Target:  5'- ----cACGAaaCCgCGCGGCGCGCGGUu -3'
miRNA:   3'- guuuuUGCU--GGaGCGCUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 77327 0.7 0.916212
Target:  5'- -cAAGAUGACgUacaugcgaGUGGCGCACGGCGa -3'
miRNA:   3'- guUUUUGCUGgAg-------CGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 72626 0.69 0.92209
Target:  5'- ----uACGGCCU-GCGGCACgccaaACGGCGc -3'
miRNA:   3'- guuuuUGCUGGAgCGCUGUG-----UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 80061 0.69 0.927709
Target:  5'- gAAAAACG-CCUCGCccaACGCcuuugGCGGCAc -3'
miRNA:   3'- gUUUUUGCuGGAGCGc--UGUG-----UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 73494 0.71 0.875646
Target:  5'- aCGAGcauGGCGACCUguaCGUGACGCACGaGUc -3'
miRNA:   3'- -GUUU---UUGCUGGA---GCGCUGUGUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 55726 0.71 0.860195
Target:  5'- gCAAAuACGGCCgagCGUGGcCAUGCGGCc -3'
miRNA:   3'- -GUUUuUGCUGGa--GCGCU-GUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 54010 0.71 0.860195
Target:  5'- ----cACGGCCUUgGCGGCGCGCGcGUAc -3'
miRNA:   3'- guuuuUGCUGGAG-CGCUGUGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 36871 0.74 0.710294
Target:  5'- aAAGAACGuCgUCGUG-CGCGCGGCAc -3'
miRNA:   3'- gUUUUUGCuGgAGCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 103946 0.74 0.730889
Target:  5'- gCGAcgGCGGCCU-GUuGCACACGGCAu -3'
miRNA:   3'- -GUUuuUGCUGGAgCGcUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 17215 0.72 0.803235
Target:  5'- uCAcAGACGuCCUCGagguugauuaugagGACACGCGGCAa -3'
miRNA:   3'- -GUuUUUGCuGGAGCg-------------CUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 39928 0.72 0.817811
Target:  5'- --uAAGCGGCCUgCGCGcaauuuGCGCGCGGUu -3'
miRNA:   3'- guuUUUGCUGGA-GCGC------UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 27208 0.72 0.835371
Target:  5'- cUAGGAuCGGCCUUGuCGgcGCACACGGCc -3'
miRNA:   3'- -GUUUUuGCUGGAGC-GC--UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 39667 0.72 0.835371
Target:  5'- ------gGGCCg-GCGGCGCGCGGCGg -3'
miRNA:   3'- guuuuugCUGGagCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 74364 0.71 0.843856
Target:  5'- --uAGACGGCgUgCGCGGC-CGCGGCGc -3'
miRNA:   3'- guuUUUGCUGgA-GCGCUGuGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 90685 0.71 0.843856
Target:  5'- --cGGAUGACCUCGaCGAUgggguugccgGCGCGGCc -3'
miRNA:   3'- guuUUUGCUGGAGC-GCUG----------UGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.