miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 105403 1.08 0.007615
Target:  5'- uCAAAAACGACCUCGCGACACACGGCAu -3'
miRNA:   3'- -GUUUUUGCUGGAGCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 50475 0.78 0.481009
Target:  5'- uCAGGAGCGACgCggccggCGCGuGCGCGCGGCAc -3'
miRNA:   3'- -GUUUUUGCUG-Ga-----GCGC-UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 88818 0.76 0.604599
Target:  5'- ----cGCG-CC-CGCGGCGCGCGGCAc -3'
miRNA:   3'- guuuuUGCuGGaGCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 101642 0.75 0.647111
Target:  5'- ---cAACGGCCgUCGCGGCGaACGGCGc -3'
miRNA:   3'- guuuUUGCUGG-AGCGCUGUgUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 26470 0.74 0.710294
Target:  5'- -cAAAACGGCCUCGCGGucguaguuuuCGCAauaGGCGg -3'
miRNA:   3'- guUUUUGCUGGAGCGCU----------GUGUg--CCGU- -5'
6749 5' -51.4 NC_001875.2 + 36871 0.74 0.710294
Target:  5'- aAAGAACGuCgUCGUG-CGCGCGGCAc -3'
miRNA:   3'- gUUUUUGCuGgAGCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 103946 0.74 0.730889
Target:  5'- gCGAcgGCGGCCU-GUuGCACACGGCAu -3'
miRNA:   3'- -GUUuuUGCUGGAgCGcUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 119425 0.74 0.730889
Target:  5'- ---cAACGGCCUgCuuGGCGCGCGGCAa -3'
miRNA:   3'- guuuUUGCUGGA-GcgCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114741 0.74 0.741054
Target:  5'- ----uGCGGCCgccaGUGGCGCGCGGCu -3'
miRNA:   3'- guuuuUGCUGGag--CGCUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 119509 0.73 0.78918
Target:  5'- uCAAAcACGACCUcucgcuggccgggCGCGuugaccacGCACACGGCGg -3'
miRNA:   3'- -GUUUuUGCUGGA-------------GCGC--------UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 36087 0.73 0.790128
Target:  5'- -cAAGACG-CgCUCGCGcggcaGCACGCGGCGg -3'
miRNA:   3'- guUUUUGCuG-GAGCGC-----UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 17215 0.72 0.803235
Target:  5'- uCAcAGACGuCCUCGagguugauuaugagGACACGCGGCAa -3'
miRNA:   3'- -GUuUUUGCuGGAGCg-------------CUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 124893 0.72 0.817811
Target:  5'- ---uGGCGAUgUCGCGGCGCAC-GCAc -3'
miRNA:   3'- guuuUUGCUGgAGCGCUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 127446 0.72 0.817811
Target:  5'- gCAAGacGAUGGCCgauuugagcagCGCGcCACGCGGCAa -3'
miRNA:   3'- -GUUU--UUGCUGGa----------GCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 94666 0.72 0.817811
Target:  5'- uGAAAugGGCCagcgCGCGGCACGggugcuggaaccCGGCGa -3'
miRNA:   3'- gUUUUugCUGGa---GCGCUGUGU------------GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 39928 0.72 0.817811
Target:  5'- --uAAGCGGCCUgCGCGcaauuuGCGCGCGGUu -3'
miRNA:   3'- guuUUUGCUGGA-GCGC------UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 73317 0.72 0.826686
Target:  5'- ----cGCGACgaCGCGACACAggucCGGCGc -3'
miRNA:   3'- guuuuUGCUGgaGCGCUGUGU----GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 39667 0.72 0.835371
Target:  5'- ------gGGCCg-GCGGCGCGCGGCGg -3'
miRNA:   3'- guuuuugCUGGagCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 27208 0.72 0.835371
Target:  5'- cUAGGAuCGGCCUUGuCGgcGCACACGGCc -3'
miRNA:   3'- -GUUUUuGCUGGAGC-GC--UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 90685 0.71 0.843856
Target:  5'- --cGGAUGACCUCGaCGAUgggguugccgGCGCGGCc -3'
miRNA:   3'- guuUUUGCUGGAGC-GCUG----------UGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.