miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 90685 0.71 0.843856
Target:  5'- --cGGAUGACCUCGaCGAUgggguugccgGCGCGGCc -3'
miRNA:   3'- guuUUUGCUGGAGC-GCUG----------UGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 54010 0.71 0.860195
Target:  5'- ----cACGGCCUUgGCGGCGCGCGcGUAc -3'
miRNA:   3'- guuuuUGCUGGAG-CGCUGUGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 55726 0.71 0.860195
Target:  5'- gCAAAuACGGCCgagCGUGGcCAUGCGGCc -3'
miRNA:   3'- -GUUUuUGCUGGa--GCGCU-GUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 73494 0.71 0.875646
Target:  5'- aCGAGcauGGCGACCUguaCGUGACGCACGaGUc -3'
miRNA:   3'- -GUUU---UUGCUGGA---GCGCUGUGUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 35520 0.71 0.875646
Target:  5'- --cGGGCGGCCgCGCGuuauAUACGCGGCu -3'
miRNA:   3'- guuUUUGCUGGaGCGC----UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 108738 0.71 0.875646
Target:  5'- ---cAGCGGCCUUugGCGgggcagcuGCACGCGGCGc -3'
miRNA:   3'- guuuUUGCUGGAG--CGC--------UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 66094 0.71 0.883022
Target:  5'- aCGAAuACGccgagGCCcgCGCGGCGgGCGGCGa -3'
miRNA:   3'- -GUUUuUGC-----UGGa-GCGCUGUgUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 12351 0.71 0.883022
Target:  5'- uCAAAAACGACUUCGCGcaGCAUGucguUGGCc -3'
miRNA:   3'- -GUUUUUGCUGGAGCGC--UGUGU----GCCGu -5'
6749 5' -51.4 NC_001875.2 + 49119 0.7 0.890157
Target:  5'- -uAAAGCGcugccccguGCCccugCGCGACugGCGGCGc -3'
miRNA:   3'- guUUUUGC---------UGGa---GCGCUGugUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 73901 0.7 0.903689
Target:  5'- ----cACGACCgcguuUCGCGACACAUuGCGu -3'
miRNA:   3'- guuuuUGCUGG-----AGCGCUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 61524 0.7 0.903689
Target:  5'- ----cGCGugCUCGCGcUugGCGGCc -3'
miRNA:   3'- guuuuUGCugGAGCGCuGugUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 122140 0.7 0.910078
Target:  5'- ----cGCGGCCggCGCG-CACgACGGCGa -3'
miRNA:   3'- guuuuUGCUGGa-GCGCuGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 14542 0.7 0.910078
Target:  5'- aCAAGAGUGAgCUgGCG-CACGCGGCc -3'
miRNA:   3'- -GUUUUUGCUgGAgCGCuGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 51563 0.7 0.910078
Target:  5'- uCAAGuGCGAgCCguUCaCGACGCGCGGCGu -3'
miRNA:   3'- -GUUUuUGCU-GG--AGcGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 59878 0.7 0.910078
Target:  5'- uGAGGACGAgCUUCGCGGCgACA-GGCu -3'
miRNA:   3'- gUUUUUGCU-GGAGCGCUG-UGUgCCGu -5'
6749 5' -51.4 NC_001875.2 + 6608 0.7 0.910078
Target:  5'- ---cAAUGACCgCGCcGCACGCGGUg -3'
miRNA:   3'- guuuUUGCUGGaGCGcUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 42690 0.7 0.916212
Target:  5'- ----cACGAaaCCgCGCGGCGCGCGGUu -3'
miRNA:   3'- guuuuUGCU--GGaGCGCUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 19945 0.7 0.916212
Target:  5'- -cGGAGCGGCCggCGCGACgguccgGC-CGGCGc -3'
miRNA:   3'- guUUUUGCUGGa-GCGCUG------UGuGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 77327 0.7 0.916212
Target:  5'- -cAAGAUGACgUacaugcgaGUGGCGCACGGCGa -3'
miRNA:   3'- guUUUUGCUGgAg-------CGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114096 0.7 0.916212
Target:  5'- cCAcAAGCGGCaUgGCGACGCACaGCAc -3'
miRNA:   3'- -GUuUUUGCUGgAgCGCUGUGUGcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.