miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 23158 0.66 0.986356
Target:  5'- gAAGGGCGGCUgCG-GGCACGgCGGCu -3'
miRNA:   3'- gUUUUUGCUGGaGCgCUGUGU-GCCGu -5'
6749 5' -51.4 NC_001875.2 + 26470 0.74 0.710294
Target:  5'- -cAAAACGGCCUCGCGGucguaguuuuCGCAauaGGCGg -3'
miRNA:   3'- guUUUUGCUGGAGCGCU----------GUGUg--CCGU- -5'
6749 5' -51.4 NC_001875.2 + 27208 0.72 0.835371
Target:  5'- cUAGGAuCGGCCUUGuCGgcGCACACGGCc -3'
miRNA:   3'- -GUUUUuGCUGGAGC-GC--UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 30983 0.67 0.978192
Target:  5'- aCGAAuACGACCUgGCcGCAgACGaGCu -3'
miRNA:   3'- -GUUUuUGCUGGAgCGcUGUgUGC-CGu -5'
6749 5' -51.4 NC_001875.2 + 33798 0.68 0.956047
Target:  5'- --uAGGCGcacuuGCC-CGuCGGCGCACGGCGc -3'
miRNA:   3'- guuUUUGC-----UGGaGC-GCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 35520 0.71 0.875646
Target:  5'- --cGGGCGGCCgCGCGuuauAUACGCGGCu -3'
miRNA:   3'- guuUUUGCUGGaGCGC----UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 36087 0.73 0.790128
Target:  5'- -cAAGACG-CgCUCGCGcggcaGCACGCGGCGg -3'
miRNA:   3'- guUUUUGCuG-GAGCGC-----UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 36871 0.74 0.710294
Target:  5'- aAAGAACGuCgUCGUG-CGCGCGGCAc -3'
miRNA:   3'- gUUUUUGCuGgAGCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 37613 0.66 0.980507
Target:  5'- aCGGcgGCGugCUCGcCGACgACAUGGg- -3'
miRNA:   3'- -GUUuuUGCugGAGC-GCUG-UGUGCCgu -5'
6749 5' -51.4 NC_001875.2 + 37893 0.66 0.98458
Target:  5'- ---cAGCGGCUugcuggCGCGGCAC-UGGCAc -3'
miRNA:   3'- guuuUUGCUGGa-----GCGCUGUGuGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 38270 0.69 0.938174
Target:  5'- aAAGAGCG-CCUCGCagcgcgcguacGACgACGCGGUg -3'
miRNA:   3'- gUUUUUGCuGGAGCG-----------CUG-UGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 39319 0.66 0.986356
Target:  5'- aGAAAACGcGCCggGCG-CGCACGaGCGc -3'
miRNA:   3'- gUUUUUGC-UGGagCGCuGUGUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 39667 0.72 0.835371
Target:  5'- ------gGGCCg-GCGGCGCGCGGCGg -3'
miRNA:   3'- guuuuugCUGGagCGCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 39928 0.72 0.817811
Target:  5'- --uAAGCGGCCUgCGCGcaauuuGCGCGCGGUu -3'
miRNA:   3'- guuUUUGCUGGA-GCGC------UGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 40844 0.68 0.963507
Target:  5'- -cAAGACGGCgCUCGCcaaGACGCGCaccgcgGGCGc -3'
miRNA:   3'- guUUUUGCUG-GAGCG---CUGUGUG------CCGU- -5'
6749 5' -51.4 NC_001875.2 + 42690 0.7 0.916212
Target:  5'- ----cACGAaaCCgCGCGGCGCGCGGUu -3'
miRNA:   3'- guuuuUGCU--GGaGCGCUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 42721 0.68 0.947613
Target:  5'- -cAAGGCGcACCcggUCGUcGCGCGCGGCGa -3'
miRNA:   3'- guUUUUGC-UGG---AGCGcUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 44525 0.66 0.980507
Target:  5'- ----uGCGGCUUCguucacagcaGCGuCGCGCGGCGu -3'
miRNA:   3'- guuuuUGCUGGAG----------CGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 44694 0.69 0.93307
Target:  5'- -----gUGACCUCGCugccCACGCGGUAc -3'
miRNA:   3'- guuuuuGCUGGAGCGcu--GUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 46600 0.67 0.972964
Target:  5'- --cGAGCGcggaacccGCgCUCGuCGACAUGCGGCGc -3'
miRNA:   3'- guuUUUGC--------UG-GAGC-GCUGUGUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.