miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 2648 0.68 0.959897
Target:  5'- aCGGAcACGucuaCUUGCGGCGC-CGGCGg -3'
miRNA:   3'- -GUUUuUGCug--GAGCGCUGUGuGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 3106 0.68 0.956047
Target:  5'- -cGGGGCGcGgCUCGCGGCGCagaccuggGCGGCGa -3'
miRNA:   3'- guUUUUGC-UgGAGCGCUGUG--------UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 3851 0.68 0.956047
Target:  5'- gCAGcAGCaGgUUCGUGugGCACGGCAg -3'
miRNA:   3'- -GUUuUUGcUgGAGCGCugUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 4986 0.66 0.980507
Target:  5'- -cAAAGCG-CCUCGCuGCuguGCGGCAc -3'
miRNA:   3'- guUUUUGCuGGAGCGcUGug-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 6608 0.7 0.910078
Target:  5'- ---cAAUGACCgCGCcGCACGCGGUg -3'
miRNA:   3'- guuuUUGCUGGaGCGcUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 6951 0.67 0.975681
Target:  5'- ----uGCGugCgcCGCGACAucgcCACGGCGc -3'
miRNA:   3'- guuuuUGCugGa-GCGCUGU----GUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 7206 0.66 0.98458
Target:  5'- ---cAACGACCcgcUCGUGuccaACACGGCc -3'
miRNA:   3'- guuuUUGCUGG---AGCGCug--UGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 9771 0.67 0.978192
Target:  5'- ------aGGCCaaGCG-CACGCGGCAc -3'
miRNA:   3'- guuuuugCUGGagCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 9907 0.68 0.959897
Target:  5'- ----cACGuuaCUCGCGACugGCGcGCGg -3'
miRNA:   3'- guuuuUGCug-GAGCGCUGugUGC-CGU- -5'
6749 5' -51.4 NC_001875.2 + 10392 0.69 0.93307
Target:  5'- --uGAACGccGCCgCGcCGugGCGCGGCAc -3'
miRNA:   3'- guuUUUGC--UGGaGC-GCugUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 11156 0.68 0.963507
Target:  5'- --uGGACGGCCggUCGaUGGCGCACaGCAg -3'
miRNA:   3'- guuUUUGCUGG--AGC-GCUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 12351 0.71 0.883022
Target:  5'- uCAAAAACGACUUCGCGcaGCAUGucguUGGCc -3'
miRNA:   3'- -GUUUUUGCUGGAGCGC--UGUGU----GCCGu -5'
6749 5' -51.4 NC_001875.2 + 14542 0.7 0.910078
Target:  5'- aCAAGAGUGAgCUgGCG-CACGCGGCc -3'
miRNA:   3'- -GUUUUUGCUgGAgCGCuGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 16072 0.67 0.978192
Target:  5'- uCGAGGACGG-CUCGCGGCgguuugaaauGCGCuGCAa -3'
miRNA:   3'- -GUUUUUGCUgGAGCGCUG----------UGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 16913 0.66 0.980507
Target:  5'- aCGAcgGCGcggGCCUCGUGuuugaGCGCAuCGGCGc -3'
miRNA:   3'- -GUUuuUGC---UGGAGCGC-----UGUGU-GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 17215 0.72 0.803235
Target:  5'- uCAcAGACGuCCUCGagguugauuaugagGACACGCGGCAa -3'
miRNA:   3'- -GUuUUUGCuGGAGCg-------------CUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 18252 0.67 0.978192
Target:  5'- aCAAAGACGcGCuCUUGUuuaccgucGACACGCGGUc -3'
miRNA:   3'- -GUUUUUGC-UG-GAGCG--------CUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 19856 0.69 0.92209
Target:  5'- gCAAGAcuCGGCCgcgUCGCGGCGCG-GGCGc -3'
miRNA:   3'- -GUUUUu-GCUGG---AGCGCUGUGUgCCGU- -5'
6749 5' -51.4 NC_001875.2 + 19945 0.7 0.916212
Target:  5'- -cGGAGCGGCCggCGCGACgguccgGC-CGGCGc -3'
miRNA:   3'- guUUUUGCUGGa-GCGCUG------UGuGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 21318 0.66 0.98458
Target:  5'- aAGAAGCG-CCagGUGGCcCGCGGCc -3'
miRNA:   3'- gUUUUUGCuGGagCGCUGuGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.