miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 5' -51.4 NC_001875.2 + 131497 0.68 0.951954
Target:  5'- gCAGAu-CGACagUCuGCGGCGCGCGGUg -3'
miRNA:   3'- -GUUUuuGCUGg-AG-CGCUGUGUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 131387 0.67 0.978192
Target:  5'- gCAAGcGCGAacaCUCGCcgguGCACgACGGCAc -3'
miRNA:   3'- -GUUUuUGCUg--GAGCGc---UGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 129533 0.68 0.947613
Target:  5'- --cGAGCuGGCCgagcugcgCGCGGC-CACGGCGc -3'
miRNA:   3'- guuUUUG-CUGGa-------GCGCUGuGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 127883 0.67 0.970034
Target:  5'- gCAAGcGCGGCgUCGUuguuGACACGCuGCAg -3'
miRNA:   3'- -GUUUuUGCUGgAGCG----CUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 127446 0.72 0.817811
Target:  5'- gCAAGacGAUGGCCgauuugagcagCGCGcCACGCGGCAa -3'
miRNA:   3'- -GUUU--UUGCUGGa----------GCGCuGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 127278 0.66 0.982633
Target:  5'- ----uGCGGCugCUCGCGuuGCugGCGGCc -3'
miRNA:   3'- guuuuUGCUG--GAGCGC--UGugUGCCGu -5'
6749 5' -51.4 NC_001875.2 + 126570 0.67 0.978192
Target:  5'- -----uCGGCCaUCGCGugGCAguuuUGGCAc -3'
miRNA:   3'- guuuuuGCUGG-AGCGCugUGU----GCCGU- -5'
6749 5' -51.4 NC_001875.2 + 125336 0.67 0.966884
Target:  5'- gGAcgGCGGCCagCGUGuugGCGCGGCAc -3'
miRNA:   3'- gUUuuUGCUGGa-GCGCug-UGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 125176 0.67 0.977212
Target:  5'- -cGAAGCGGCCguugcccagauugCGCG-UGCugGGCAc -3'
miRNA:   3'- guUUUUGCUGGa------------GCGCuGUGugCCGU- -5'
6749 5' -51.4 NC_001875.2 + 124893 0.72 0.817811
Target:  5'- ---uGGCGAUgUCGCGGCGCAC-GCAc -3'
miRNA:   3'- guuuUUGCUGgAGCGCUGUGUGcCGU- -5'
6749 5' -51.4 NC_001875.2 + 123758 0.68 0.947613
Target:  5'- ----uACGGCCgUCGCGACaacaACGCGGaCGc -3'
miRNA:   3'- guuuuUGCUGG-AGCGCUG----UGUGCC-GU- -5'
6749 5' -51.4 NC_001875.2 + 122140 0.7 0.910078
Target:  5'- ----cGCGGCCggCGCG-CACgACGGCGa -3'
miRNA:   3'- guuuuUGCUGGa-GCGCuGUG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 121934 0.66 0.98458
Target:  5'- ----uGCGGCCacaucuUUGUGguGCGCGCGGCAg -3'
miRNA:   3'- guuuuUGCUGG------AGCGC--UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 119509 0.73 0.78918
Target:  5'- uCAAAcACGACCUcucgcuggccgggCGCGuugaccacGCACACGGCGg -3'
miRNA:   3'- -GUUUuUGCUGGA-------------GCGC--------UGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 119451 0.69 0.938174
Target:  5'- ---cAGCGGCC-CGaCGACGaGCGGCAc -3'
miRNA:   3'- guuuUUGCUGGaGC-GCUGUgUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 119425 0.74 0.730889
Target:  5'- ---cAACGGCCUgCuuGGCGCGCGGCAa -3'
miRNA:   3'- guuuUUGCUGGA-GcgCUGUGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 118185 0.67 0.969422
Target:  5'- aAAAGugGGCUguuuguguugaGCGGCgGCGCGGCAa -3'
miRNA:   3'- gUUUUugCUGGag---------CGCUG-UGUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 118006 0.67 0.970034
Target:  5'- uCGAAAACGcCCUcuuccgguacCGCGACcaguGCgACGGCAa -3'
miRNA:   3'- -GUUUUUGCuGGA----------GCGCUG----UG-UGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114970 0.68 0.959897
Target:  5'- aUAGAAGCGG--UCGCG-CugGCGGCGc -3'
miRNA:   3'- -GUUUUUGCUggAGCGCuGugUGCCGU- -5'
6749 5' -51.4 NC_001875.2 + 114741 0.74 0.741054
Target:  5'- ----uGCGGCCgccaGUGGCGCGCGGCu -3'
miRNA:   3'- guuuuUGCUGGag--CGCUGUGUGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.