miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
675	3'	-57.2	AC_000018.1	+	22056	0.67	0.457733
	Target:  5'- uAGCGC-CUCCUGGuugcgGCGCaGggUGGGc -3' miRNA:   3'- cUCGUGuGGGGGCU-----UGCGcCuuACCC- -5'
675	3'	-57.2	AC_000018.1	+	28189	0.67	0.447737
	Target:  5'- gGAGCuCACCUCCGGuuuUG-GGAGUGGu -3' miRNA:   3'- -CUCGuGUGGGGGCUu--GCgCCUUACCc -5'
675	3'	-57.2	AC_000018.1	+	17301	0.67	0.428115
	Target:  5'- uAGCGaguGCCUCUGuAACcCGGAGUGGGa -3' miRNA:   3'- cUCGUg--UGGGGGC-UUGcGCCUUACCC- -5'
675	3'	-57.2	AC_000018.1	+	5064	0.68	0.372443
	Target:  5'- cAGCAgACCUCCucguuuCGCGGGuUGGGa -3' miRNA:   3'- cUCGUgUGGGGGcuu---GCGCCUuACCC- -5'
675	3'	-57.2	AC_000018.1	+	21628	0.72	0.201606
	Target:  5'- uAGUcaACACUgCCGGACGCGaGAcgGGGg -3' miRNA:   3'- cUCG--UGUGGgGGCUUGCGC-CUuaCCC- -5'
675	3'	-57.2	AC_000018.1	+	18492	0.75	0.140879
	Target:  5'- cGGGCGCgguguGCCCCCaGGACGCGGucUGGc -3' miRNA:   3'- -CUCGUG-----UGGGGG-CUUGCGCCuuACCc -5'
675	3'	-57.2	AC_000018.1	+	15957	0.75	0.133173
	Target:  5'- uGAGUGCGCCCCaggGAGCGCGGAAa--- -3' miRNA:   3'- -CUCGUGUGGGGg--CUUGCGCCUUaccc -5'
675	3'	-57.2	AC_000018.1	+	23748	1.09	0.0004
	Target:  5'- gGAGCACACCCCCGAACGCGGAAUGGGc -3' miRNA:   3'- -CUCGUGUGGGGGCUUGCGCCUUACCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home