Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6750 | 3' | -51 | NC_001875.2 | + | 37049 | 0.68 | 0.955005 |
Target: 5'- gGCG-CGUGCAcgcgcgcgGACGCggcCAcgCUGUGUu -3' miRNA: 3'- -CGCgGCACGU--------UUGCGa--GUuaGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 68636 | 0.68 | 0.954598 |
Target: 5'- aGCGUugcuagaUGUGCAAagugaaGCGCUCcAUCUG-GCu -3' miRNA: 3'- -CGCG-------GCACGUU------UGCGAGuUAGACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 74428 | 0.69 | 0.950823 |
Target: 5'- gGCGCUGgacaaguuuuUGCAcAACGC-CAAUCgcGUGCa -3' miRNA: 3'- -CGCGGC----------ACGU-UUGCGaGUUAGa-CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 39051 | 0.69 | 0.950823 |
Target: 5'- gGCGCUGUaccGCAAGCGCauggcCA--UUGUGCg -3' miRNA: 3'- -CGCGGCA---CGUUUGCGa----GUuaGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 100885 | 0.69 | 0.950823 |
Target: 5'- aGCGCgCGcGUggGCGCcauggCGAgacCUGUGCg -3' miRNA: 3'- -CGCG-GCaCGuuUGCGa----GUUa--GACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 9605 | 0.69 | 0.950823 |
Target: 5'- gGCG-CGUGCAacGACGC---GUUUGUGCu -3' miRNA: 3'- -CGCgGCACGU--UUGCGaguUAGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 84119 | 0.69 | 0.946388 |
Target: 5'- gGCGCCGgcuCAAGCaGCaggCAGUC-GUGCa -3' miRNA: 3'- -CGCGGCac-GUUUG-CGa--GUUAGaCACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 85375 | 0.69 | 0.946388 |
Target: 5'- cGCGuuG-GCAAACGCcguuugCGAUUUGcGCg -3' miRNA: 3'- -CGCggCaCGUUUGCGa-----GUUAGACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 89783 | 0.69 | 0.945931 |
Target: 5'- cGCGCuCGUGCAcgugcgcgaacgcAGCGCgggcggcaGAUCgugGUGCc -3' miRNA: 3'- -CGCG-GCACGU-------------UUGCGag------UUAGa--CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 53919 | 0.69 | 0.941698 |
Target: 5'- cGCGCCGuUGCGGGCGCg----UUG-GCg -3' miRNA: 3'- -CGCGGC-ACGUUUGCGaguuaGACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 82248 | 0.69 | 0.941698 |
Target: 5'- cGCGCUgGUGguAGCGCUC-GUCg--GCg -3' miRNA: 3'- -CGCGG-CACguUUGCGAGuUAGacaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 38455 | 0.69 | 0.93675 |
Target: 5'- aGUGCCG-GCGcGCGCUagAAUUgGUGCa -3' miRNA: 3'- -CGCGGCaCGUuUGCGAg-UUAGaCACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 127433 | 0.69 | 0.93675 |
Target: 5'- cCGCCGUGCAugagcaagacgAugGC-CGAUUUGaGCa -3' miRNA: 3'- cGCGGCACGU-----------UugCGaGUUAGACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 42862 | 0.7 | 0.928293 |
Target: 5'- cGCGCCGcaggcGCAGguccgccagcgcaacGCGUUCAAcgucgaggCUGUGCg -3' miRNA: 3'- -CGCGGCa----CGUU---------------UGCGAGUUa-------GACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 16952 | 0.7 | 0.926074 |
Target: 5'- uGCGCCacGUGaccaccAGCGCUUuuuGUUUGUGCa -3' miRNA: 3'- -CGCGG--CACgu----UUGCGAGu--UAGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 44605 | 0.7 | 0.926074 |
Target: 5'- -gGCCcaGCGcGCGCUCGGggCUGUGUa -3' miRNA: 3'- cgCGGcaCGUuUGCGAGUUa-GACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 101166 | 0.7 | 0.926074 |
Target: 5'- -gGCCGUGCGcguGGCGCuggUCAAUUacGUGCc -3' miRNA: 3'- cgCGGCACGU---UUGCG---AGUUAGa-CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 34808 | 0.7 | 0.926074 |
Target: 5'- uGCGCCG-GCAAGCGUUUAcgacgCUGccGCc -3' miRNA: 3'- -CGCGGCaCGUUUGCGAGUua---GACa-CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 103924 | 0.7 | 0.924949 |
Target: 5'- uGCGaCCGUGUAAACGCgggcugcgacggCGGcCUGUuGCa -3' miRNA: 3'- -CGC-GGCACGUUUGCGa-----------GUUaGACA-CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 67138 | 0.7 | 0.920344 |
Target: 5'- aGCGCCGUGUugcuGCGgCU--GUCUGcGCg -3' miRNA: 3'- -CGCGGCACGuu--UGC-GAguUAGACaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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