miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 97726 0.67 0.975087
Target:  5'- cGCGCUagaccGCGAGCGCgCGcgCUcGUGCa -3'
miRNA:   3'- -CGCGGca---CGUUUGCGaGUuaGA-CACG- -5'
6750 3' -51 NC_001875.2 + 59912 0.67 0.975087
Target:  5'- gGCGCgGUGgAuaacguuACGCUCA-UCaGUGCc -3'
miRNA:   3'- -CGCGgCACgUu------UGCGAGUuAGaCACG- -5'
6750 3' -51 NC_001875.2 + 82199 0.67 0.975087
Target:  5'- gGCGCCG-GCGGcCGCUCGuGUCgccGCu -3'
miRNA:   3'- -CGCGGCaCGUUuGCGAGU-UAGacaCG- -5'
6750 3' -51 NC_001875.2 + 122051 0.67 0.974275
Target:  5'- gGCGCCGUGCAAguacaccccggagcGgGUUCAGaugaUGUGg -3'
miRNA:   3'- -CGCGGCACGUU--------------UgCGAGUUag--ACACg -5'
6750 3' -51 NC_001875.2 + 114586 0.67 0.972306
Target:  5'- cGCGUCG-GCAAACGCggcGUCUuGUuGCc -3'
miRNA:   3'- -CGCGGCaCGUUUGCGaguUAGA-CA-CG- -5'
6750 3' -51 NC_001875.2 + 10058 0.67 0.972306
Target:  5'- aCGCCGUGCAgGAUGaaugCGGUCgUGUGg -3'
miRNA:   3'- cGCGGCACGU-UUGCga--GUUAG-ACACg -5'
6750 3' -51 NC_001875.2 + 97499 0.67 0.972306
Target:  5'- uGCGCCGcGCGcuUGCUC--UC-GUGCg -3'
miRNA:   3'- -CGCGGCaCGUuuGCGAGuuAGaCACG- -5'
6750 3' -51 NC_001875.2 + 44270 0.68 0.970533
Target:  5'- uGCGCCGcuguuuuuUGCAguuucauaguuucggAGCGCuuccUCAAUCUGgGCc -3'
miRNA:   3'- -CGCGGC--------ACGU---------------UUGCG----AGUUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 31068 0.68 0.969308
Target:  5'- --aCUGUGC---CGCUCAAcCUGUGCa -3'
miRNA:   3'- cgcGGCACGuuuGCGAGUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 41457 0.68 0.969308
Target:  5'- gGCGCCGguugcgGCGcGCGCggcguGUCUuGUGUg -3'
miRNA:   3'- -CGCGGCa-----CGUuUGCGagu--UAGA-CACG- -5'
6750 3' -51 NC_001875.2 + 4292 0.68 0.969308
Target:  5'- cGCGCCGaucaaGCAcGCGgUCuugcauUUUGUGCa -3'
miRNA:   3'- -CGCGGCa----CGUuUGCgAGuu----AGACACG- -5'
6750 3' -51 NC_001875.2 + 59732 0.68 0.969308
Target:  5'- cGCGCUGgaGCAGugGUUCAGcacUUUGcGCg -3'
miRNA:   3'- -CGCGGCa-CGUUugCGAGUU---AGACaCG- -5'
6750 3' -51 NC_001875.2 + 55986 0.68 0.966085
Target:  5'- -gGCCGUGCGcuUGCUCAgauuuugcAUCUG-GUc -3'
miRNA:   3'- cgCGGCACGUuuGCGAGU--------UAGACaCG- -5'
6750 3' -51 NC_001875.2 + 89013 0.68 0.966085
Target:  5'- cGCGCuacgCGUGCGAGCGCaaguugUCAuUCagcGUGCc -3'
miRNA:   3'- -CGCG----GCACGUUUGCG------AGUuAGa--CACG- -5'
6750 3' -51 NC_001875.2 + 93399 0.68 0.964041
Target:  5'- cGCGCCG-GCAcuugcugcuuucguaGGCggGCUCAaauAUgUGUGCg -3'
miRNA:   3'- -CGCGGCaCGU---------------UUG--CGAGU---UAgACACG- -5'
6750 3' -51 NC_001875.2 + 61909 0.68 0.962631
Target:  5'- cGCGCCGUGUcacggcggAAACGCgaaCAAUUUaGcGCg -3'
miRNA:   3'- -CGCGGCACG--------UUUGCGa--GUUAGA-CaCG- -5'
6750 3' -51 NC_001875.2 + 57275 0.68 0.958939
Target:  5'- cGCGUCGUGCAGAUugcaCUCGuAUUgcGUGCg -3'
miRNA:   3'- -CGCGGCACGUUUGc---GAGU-UAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 39093 0.68 0.958939
Target:  5'- cGUGCUGUGCcAACGCUgCAGUUcc-GCg -3'
miRNA:   3'- -CGCGGCACGuUUGCGA-GUUAGacaCG- -5'
6750 3' -51 NC_001875.2 + 62674 0.68 0.958939
Target:  5'- uUGCCGUGCcGGCaCUUggUUgUGUGCg -3'
miRNA:   3'- cGCGGCACGuUUGcGAGuuAG-ACACG- -5'
6750 3' -51 NC_001875.2 + 44456 0.68 0.958939
Target:  5'- gGCGCCGUcggcGCAGuGCGCcaAGUC-GUGCa -3'
miRNA:   3'- -CGCGGCA----CGUU-UGCGagUUAGaCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.