miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 95318 0.66 0.984201
Target:  5'- aGCGCCGUuugGCGAAacaUCAAUUUGUcGUa -3'
miRNA:   3'- -CGCGGCA---CGUUUgcgAGUUAGACA-CG- -5'
6750 3' -51 NC_001875.2 + 89157 0.66 0.984201
Target:  5'- cGCGCCGcGCGGuuuCGUgCAcgCUG-GCg -3'
miRNA:   3'- -CGCGGCaCGUUu--GCGaGUuaGACaCG- -5'
6750 3' -51 NC_001875.2 + 46934 0.66 0.984201
Target:  5'- aGCcCCGUGCu-GCGCUacgcCAAggUUGUGCu -3'
miRNA:   3'- -CGcGGCACGuuUGCGA----GUUa-GACACG- -5'
6750 3' -51 NC_001875.2 + 126243 0.67 0.982207
Target:  5'- uUGCCGUGC--ACGC---AUCUGUuGCg -3'
miRNA:   3'- cGCGGCACGuuUGCGaguUAGACA-CG- -5'
6750 3' -51 NC_001875.2 + 110812 0.67 0.982207
Target:  5'- aCGCCGcGCAggUGgaCGcgCUGgUGCg -3'
miRNA:   3'- cGCGGCaCGUuuGCgaGUuaGAC-ACG- -5'
6750 3' -51 NC_001875.2 + 44010 0.67 0.982207
Target:  5'- gGCGCCGUGCccAGCGUg----CUGUaccGCa -3'
miRNA:   3'- -CGCGGCACGu-UUGCGaguuaGACA---CG- -5'
6750 3' -51 NC_001875.2 + 65128 0.67 0.982207
Target:  5'- uCGCCGUGCAguacAugGUgucggaggCGGUCacGUGCa -3'
miRNA:   3'- cGCGGCACGU----UugCGa-------GUUAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 73785 0.67 0.981786
Target:  5'- aGCGCggucagCGUGCAcaaaaccaaccuGCGCgacgagCGGUUUGUGCa -3'
miRNA:   3'- -CGCG------GCACGUu-----------UGCGa-----GUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 26222 0.67 0.980029
Target:  5'- uGCGCaccacaCGUGCAAcCGCUCuuggcgCUGcgGCg -3'
miRNA:   3'- -CGCG------GCACGUUuGCGAGuua---GACa-CG- -5'
6750 3' -51 NC_001875.2 + 77675 0.67 0.980029
Target:  5'- aGCGCCGcUGUccGAGCGCgu-AUUUGcGCg -3'
miRNA:   3'- -CGCGGC-ACG--UUUGCGaguUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 54968 0.67 0.980029
Target:  5'- uUGCCGgacGCGu-CGCUCGcgCUGgGCg -3'
miRNA:   3'- cGCGGCa--CGUuuGCGAGUuaGACaCG- -5'
6750 3' -51 NC_001875.2 + 130782 0.67 0.980029
Target:  5'- cGCGCgGUcGCcaacguuGCGCcCAAcgCUGUGCg -3'
miRNA:   3'- -CGCGgCA-CGuu-----UGCGaGUUa-GACACG- -5'
6750 3' -51 NC_001875.2 + 34760 0.67 0.977658
Target:  5'- -aGCCGUGCG--UGUUCAAUgUaaGUGCc -3'
miRNA:   3'- cgCGGCACGUuuGCGAGUUAgA--CACG- -5'
6750 3' -51 NC_001875.2 + 38270 0.67 0.977658
Target:  5'- cGCGuuGUucaucGUAAACGCgagcacgCGGUUUGUGUu -3'
miRNA:   3'- -CGCggCA-----CGUUUGCGa------GUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 48629 0.67 0.977658
Target:  5'- gGUGCCGcUGCu-GCGCagcCAGUCgcugGUGUg -3'
miRNA:   3'- -CGCGGC-ACGuuUGCGa--GUUAGa---CACG- -5'
6750 3' -51 NC_001875.2 + 32826 0.67 0.977658
Target:  5'- gGCGCCGcuUGCGAGCGUggcacCAAaacCUGgUGCc -3'
miRNA:   3'- -CGCGGC--ACGUUUGCGa----GUUa--GAC-ACG- -5'
6750 3' -51 NC_001875.2 + 69205 0.67 0.97741
Target:  5'- gGCGCCGacgGCcaguACGCUuguucgggcgacgCGcgCUGUGCc -3'
miRNA:   3'- -CGCGGCa--CGuu--UGCGA-------------GUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 84044 0.67 0.97614
Target:  5'- gGCGCUGUGCuucaaaaaaaaggaaAAGUGCaCAGUCggGUGCg -3'
miRNA:   3'- -CGCGGCACG---------------UUUGCGaGUUAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 97726 0.67 0.975087
Target:  5'- cGCGCUagaccGCGAGCGCgCGcgCUcGUGCa -3'
miRNA:   3'- -CGCGGca---CGUUUGCGaGUuaGA-CACG- -5'
6750 3' -51 NC_001875.2 + 82199 0.67 0.975087
Target:  5'- gGCGCCG-GCGGcCGCUCGuGUCgccGCu -3'
miRNA:   3'- -CGCGGCaCGUUuGCGAGU-UAGacaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.