miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 79263 0.71 0.873064
Target:  5'- gGCGCgCGUGgAGACGaugUCAauGUCUGUGg -3'
miRNA:   3'- -CGCG-GCACgUUUGCg--AGU--UAGACACg -5'
6750 3' -51 NC_001875.2 + 95991 0.71 0.877592
Target:  5'- cGCGCCGUGCAguacccuGcaaaaggccaccagACGCcCAugCUGUGCg -3'
miRNA:   3'- -CGCGGCACGU-------U--------------UGCGaGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 71647 0.71 0.880564
Target:  5'- cCGCCGgcGCAAuucaacgaaGCGCUguAUUUGUGCc -3'
miRNA:   3'- cGCGGCa-CGUU---------UGCGAguUAGACACG- -5'
6750 3' -51 NC_001875.2 + 112826 0.71 0.880564
Target:  5'- cGCGCaCGUGCaAAGCGCguugCGGcCUGcGCg -3'
miRNA:   3'- -CGCG-GCACG-UUUGCGa---GUUaGACaCG- -5'
6750 3' -51 NC_001875.2 + 94246 0.71 0.880564
Target:  5'- cCGCCGUGCGgccggccgcGGCGCUCGcgCcG-GCg -3'
miRNA:   3'- cGCGGCACGU---------UUGCGAGUuaGaCaCG- -5'
6750 3' -51 NC_001875.2 + 109158 0.7 0.894835
Target:  5'- -aGCCGaUGCAugauGCGUUUugAGUUUGUGCa -3'
miRNA:   3'- cgCGGC-ACGUu---UGCGAG--UUAGACACG- -5'
6750 3' -51 NC_001875.2 + 45736 0.7 0.894835
Target:  5'- cCGCCGagcUGgAAAUGCUCAAcgUGUGCc -3'
miRNA:   3'- cGCGGC---ACgUUUGCGAGUUagACACG- -5'
6750 3' -51 NC_001875.2 + 98911 0.7 0.901596
Target:  5'- gGCGCCGUaGCucgcGGCGC-CGGUUgcgcGUGCg -3'
miRNA:   3'- -CGCGGCA-CGu---UUGCGaGUUAGa---CACG- -5'
6750 3' -51 NC_001875.2 + 126339 0.7 0.908103
Target:  5'- uGCGCgCGUGCGc-CGgUCGugCUGUGCa -3'
miRNA:   3'- -CGCG-GCACGUuuGCgAGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 120172 0.7 0.908103
Target:  5'- cGCGUCcuuUGCAGcuGCGCaaCAAUCUGUGUu -3'
miRNA:   3'- -CGCGGc--ACGUU--UGCGa-GUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 129194 0.7 0.908103
Target:  5'- gGCGCCGcaaGUAGACGUguccgugCUGUGCc -3'
miRNA:   3'- -CGCGGCa--CGUUUGCGaguua--GACACG- -5'
6750 3' -51 NC_001875.2 + 62760 0.7 0.914353
Target:  5'- cGCGCCGU-UGAACGCgCAGgg-GUGCg -3'
miRNA:   3'- -CGCGGCAcGUUUGCGaGUUagaCACG- -5'
6750 3' -51 NC_001875.2 + 31305 0.7 0.914353
Target:  5'- cGCGCCGUuuuGC-GACGC---AUCUGUGUu -3'
miRNA:   3'- -CGCGGCA---CGuUUGCGaguUAGACACG- -5'
6750 3' -51 NC_001875.2 + 118444 0.7 0.919167
Target:  5'- gGC-CCGUGCAAGCGCgccuggugCcGUGCg -3'
miRNA:   3'- -CGcGGCACGUUUGCGaguua---GaCACG- -5'
6750 3' -51 NC_001875.2 + 42246 0.7 0.920344
Target:  5'- uCGaCCGUGCAAugGCgcacguuaagUUGAUUUGUGUa -3'
miRNA:   3'- cGC-GGCACGUUugCG----------AGUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 67138 0.7 0.920344
Target:  5'- aGCGCCGUGUugcuGCGgCU--GUCUGcGCg -3'
miRNA:   3'- -CGCGGCACGuu--UGC-GAguUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 103924 0.7 0.924949
Target:  5'- uGCGaCCGUGUAAACGCgggcugcgacggCGGcCUGUuGCa -3'
miRNA:   3'- -CGC-GGCACGUUUGCGa-----------GUUaGACA-CG- -5'
6750 3' -51 NC_001875.2 + 101166 0.7 0.926074
Target:  5'- -gGCCGUGCGcguGGCGCuggUCAAUUacGUGCc -3'
miRNA:   3'- cgCGGCACGU---UUGCG---AGUUAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 16952 0.7 0.926074
Target:  5'- uGCGCCacGUGaccaccAGCGCUUuuuGUUUGUGCa -3'
miRNA:   3'- -CGCGG--CACgu----UUGCGAGu--UAGACACG- -5'
6750 3' -51 NC_001875.2 + 44605 0.7 0.926074
Target:  5'- -gGCCcaGCGcGCGCUCGGggCUGUGUa -3'
miRNA:   3'- cgCGGcaCGUuUGCGAGUUa-GACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.