miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 105264 1.15 0.002884
Target:  5'- gGCGCCGUGCAAACGCUCAAUCUGUGCa -3'
miRNA:   3'- -CGCGGCACGUUUGCGAGUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 101963 0.83 0.295475
Target:  5'- gGCGCCGgugGCGAACGCgacgCAGgcgUUGUGCa -3'
miRNA:   3'- -CGCGGCa--CGUUUGCGa---GUUa--GACACG- -5'
6750 3' -51 NC_001875.2 + 88044 0.78 0.525716
Target:  5'- -aGCCGUGCcAACGCUCAaGUUUGUcGCc -3'
miRNA:   3'- cgCGGCACGuUUGCGAGU-UAGACA-CG- -5'
6750 3' -51 NC_001875.2 + 65603 0.78 0.536041
Target:  5'- gGCGCaGUGCgAAACGCUCAcccgGUUUGUGUu -3'
miRNA:   3'- -CGCGgCACG-UUUGCGAGU----UAGACACG- -5'
6750 3' -51 NC_001875.2 + 52214 0.76 0.609891
Target:  5'- cGCGCCGUGCAaacugGACGCgCGA-CUGcgGCu -3'
miRNA:   3'- -CGCGGCACGU-----UUGCGaGUUaGACa-CG- -5'
6750 3' -51 NC_001875.2 + 14521 0.75 0.67397
Target:  5'- cGCGCCGUGuCAAGcCGCUCAAcaagagugagCUG-GCg -3'
miRNA:   3'- -CGCGGCAC-GUUU-GCGAGUUa---------GACaCG- -5'
6750 3' -51 NC_001875.2 + 37363 0.74 0.746852
Target:  5'- cGCGCuCGUGCGAACGCgCGcgCcGcUGCa -3'
miRNA:   3'- -CGCG-GCACGUUUGCGaGUuaGaC-ACG- -5'
6750 3' -51 NC_001875.2 + 14904 0.74 0.756909
Target:  5'- aCGCgCGUGUGGAUGCUCuacGUCauUGUGCg -3'
miRNA:   3'- cGCG-GCACGUUUGCGAGu--UAG--ACACG- -5'
6750 3' -51 NC_001875.2 + 98037 0.73 0.786313
Target:  5'- cGCGCCGUGCGccGACGggCAA---GUGCg -3'
miRNA:   3'- -CGCGGCACGU--UUGCgaGUUagaCACG- -5'
6750 3' -51 NC_001875.2 + 61604 0.73 0.786313
Target:  5'- gGCGCCG-GC-GGCGCuUCGggCUGUGUc -3'
miRNA:   3'- -CGCGGCaCGuUUGCG-AGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 89524 0.73 0.786313
Target:  5'- gGgGCCGcUGgGcGCGCUCGAUCUGUacuugGCg -3'
miRNA:   3'- -CgCGGC-ACgUuUGCGAGUUAGACA-----CG- -5'
6750 3' -51 NC_001875.2 + 41339 0.73 0.804248
Target:  5'- aCGCCGUGCAAgugggccGCGCgCAGUUUGaacGCg -3'
miRNA:   3'- cGCGGCACGUU-------UGCGaGUUAGACa--CG- -5'
6750 3' -51 NC_001875.2 + 61501 0.73 0.805175
Target:  5'- cGCGCCG-GCucGGCGCcgCAGUCcgcGUGCu -3'
miRNA:   3'- -CGCGGCaCGu-UUGCGa-GUUAGa--CACG- -5'
6750 3' -51 NC_001875.2 + 131380 0.72 0.823353
Target:  5'- -gGCCuGUGCAAGCGCgaaCAcUCgccgGUGCa -3'
miRNA:   3'- cgCGG-CACGUUUGCGa--GUuAGa---CACG- -5'
6750 3' -51 NC_001875.2 + 124187 0.72 0.823353
Target:  5'- cGUGCCGUGgauguaGAGCGCgUCGgcGUgUGUGCg -3'
miRNA:   3'- -CGCGGCACg-----UUUGCG-AGU--UAgACACG- -5'
6750 3' -51 NC_001875.2 + 51543 0.72 0.823353
Target:  5'- cGCGCUG-GCGAcgGCGCUC-GUCaaGUGCg -3'
miRNA:   3'- -CGCGGCaCGUU--UGCGAGuUAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 76957 0.72 0.840772
Target:  5'- cGCGCCGUGCGAGC-C-CAA---GUGCg -3'
miRNA:   3'- -CGCGGCACGUUUGcGaGUUagaCACG- -5'
6750 3' -51 NC_001875.2 + 57795 0.72 0.840772
Target:  5'- aCGCCGaGCAgcgcgguuuuuAGCGCggCAAUCUuGUGCg -3'
miRNA:   3'- cGCGGCaCGU-----------UUGCGa-GUUAGA-CACG- -5'
6750 3' -51 NC_001875.2 + 95049 0.71 0.857363
Target:  5'- cGCGCacCGUGCAgauuGACGC-CGacggGUUUGUGCg -3'
miRNA:   3'- -CGCG--GCACGU----UUGCGaGU----UAGACACG- -5'
6750 3' -51 NC_001875.2 + 79885 0.71 0.860576
Target:  5'- cGCGCgCGUGCGGcacgucGCGCccaaaguagcgccgCAcgCUGUGCa -3'
miRNA:   3'- -CGCG-GCACGUU------UGCGa-------------GUuaGACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.