miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 567 0.66 0.984201
Target:  5'- gGCGuuGUGCAAGuCGUUCAAcgcGUcGCa -3'
miRNA:   3'- -CGCggCACGUUU-GCGAGUUagaCA-CG- -5'
6750 3' -51 NC_001875.2 + 1714 0.66 0.987676
Target:  5'- cUGCUuuucggGUGCGAACGCUCucgaacggCgUGUGCu -3'
miRNA:   3'- cGCGG------CACGUUUGCGAGuua-----G-ACACG- -5'
6750 3' -51 NC_001875.2 + 4292 0.68 0.969308
Target:  5'- cGCGCCGaucaaGCAcGCGgUCuugcauUUUGUGCa -3'
miRNA:   3'- -CGCGGCa----CGUuUGCgAGuu----AGACACG- -5'
6750 3' -51 NC_001875.2 + 6944 0.66 0.987676
Target:  5'- cGCGUCGUGCGuGCGCcgCGAcaUCgccacgGCg -3'
miRNA:   3'- -CGCGGCACGUuUGCGa-GUU--AGaca---CG- -5'
6750 3' -51 NC_001875.2 + 9605 0.69 0.950823
Target:  5'- gGCG-CGUGCAacGACGC---GUUUGUGCu -3'
miRNA:   3'- -CGCgGCACGU--UUGCGaguUAGACACG- -5'
6750 3' -51 NC_001875.2 + 10058 0.67 0.972306
Target:  5'- aCGCCGUGCAgGAUGaaugCGGUCgUGUGg -3'
miRNA:   3'- cGCGGCACGU-UUGCga--GUUAG-ACACg -5'
6750 3' -51 NC_001875.2 + 11932 0.66 0.990528
Target:  5'- uGCGCgCG-GC--GCGC-CGA-CUGUGCg -3'
miRNA:   3'- -CGCG-GCaCGuuUGCGaGUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 14521 0.75 0.67397
Target:  5'- cGCGCCGUGuCAAGcCGCUCAAcaagagugagCUG-GCg -3'
miRNA:   3'- -CGCGGCAC-GUUU-GCGAGUUa---------GACaCG- -5'
6750 3' -51 NC_001875.2 + 14904 0.74 0.756909
Target:  5'- aCGCgCGUGUGGAUGCUCuacGUCauUGUGCg -3'
miRNA:   3'- cGCG-GCACGUUUGCGAGu--UAG--ACACG- -5'
6750 3' -51 NC_001875.2 + 16952 0.7 0.926074
Target:  5'- uGCGCCacGUGaccaccAGCGCUUuuuGUUUGUGCa -3'
miRNA:   3'- -CGCGG--CACgu----UUGCGAGu--UAGACACG- -5'
6750 3' -51 NC_001875.2 + 26222 0.67 0.980029
Target:  5'- uGCGCaccacaCGUGCAAcCGCUCuuggcgCUGcgGCg -3'
miRNA:   3'- -CGCG------GCACGUUuGCGAGuua---GACa-CG- -5'
6750 3' -51 NC_001875.2 + 29280 0.66 0.990528
Target:  5'- cGCGCCG-GCGGG-GCgCGGUCgUGUGg -3'
miRNA:   3'- -CGCGGCaCGUUUgCGaGUUAG-ACACg -5'
6750 3' -51 NC_001875.2 + 31068 0.68 0.969308
Target:  5'- --aCUGUGC---CGCUCAAcCUGUGCa -3'
miRNA:   3'- cgcGGCACGuuuGCGAGUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 31305 0.7 0.914353
Target:  5'- cGCGCCGUuuuGC-GACGC---AUCUGUGUu -3'
miRNA:   3'- -CGCGGCA---CGuUUGCGaguUAGACACG- -5'
6750 3' -51 NC_001875.2 + 32826 0.67 0.977658
Target:  5'- gGCGCCGcuUGCGAGCGUggcacCAAaacCUGgUGCc -3'
miRNA:   3'- -CGCGGC--ACGUUUGCGa----GUUa--GAC-ACG- -5'
6750 3' -51 NC_001875.2 + 34760 0.67 0.977658
Target:  5'- -aGCCGUGCG--UGUUCAAUgUaaGUGCc -3'
miRNA:   3'- cgCGGCACGUuuGCGAGUUAgA--CACG- -5'
6750 3' -51 NC_001875.2 + 34808 0.7 0.926074
Target:  5'- uGCGCCG-GCAAGCGUUUAcgacgCUGccGCc -3'
miRNA:   3'- -CGCGGCaCGUUUGCGAGUua---GACa-CG- -5'
6750 3' -51 NC_001875.2 + 36659 0.66 0.984201
Target:  5'- cGCGUCGUGC--GCGCUgAGcUCgggGCg -3'
miRNA:   3'- -CGCGGCACGuuUGCGAgUU-AGacaCG- -5'
6750 3' -51 NC_001875.2 + 37049 0.68 0.955005
Target:  5'- gGCG-CGUGCAcgcgcgcgGACGCggcCAcgCUGUGUu -3'
miRNA:   3'- -CGCgGCACGU--------UUGCGa--GUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 37121 0.66 0.987676
Target:  5'- gGCGCCGcGCcGGCGUUUGcGUCUuuccgcGUGCg -3'
miRNA:   3'- -CGCGGCaCGuUUGCGAGU-UAGA------CACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.