miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 131483 0.66 0.986021
Target:  5'- cGCGCggccaaCGUGCAGAuCGa-CAGUCUGcgGCg -3'
miRNA:   3'- -CGCG------GCACGUUU-GCgaGUUAGACa-CG- -5'
6750 3' -51 NC_001875.2 + 131380 0.72 0.823353
Target:  5'- -gGCCuGUGCAAGCGCgaaCAcUCgccgGUGCa -3'
miRNA:   3'- cgCGG-CACGUUUGCGa--GUuAGa---CACG- -5'
6750 3' -51 NC_001875.2 + 130782 0.67 0.980029
Target:  5'- cGCGCgGUcGCcaacguuGCGCcCAAcgCUGUGCg -3'
miRNA:   3'- -CGCGgCA-CGuu-----UGCGaGUUa-GACACG- -5'
6750 3' -51 NC_001875.2 + 129194 0.7 0.908103
Target:  5'- gGCGCCGcaaGUAGACGUguccgugCUGUGCc -3'
miRNA:   3'- -CGCGGCa--CGUUUGCGaguua--GACACG- -5'
6750 3' -51 NC_001875.2 + 127433 0.69 0.93675
Target:  5'- cCGCCGUGCAugagcaagacgAugGC-CGAUUUGaGCa -3'
miRNA:   3'- cGCGGCACGU-----------UugCGaGUUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 126339 0.7 0.908103
Target:  5'- uGCGCgCGUGCGc-CGgUCGugCUGUGCa -3'
miRNA:   3'- -CGCG-GCACGUuuGCgAGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 126243 0.67 0.982207
Target:  5'- uUGCCGUGC--ACGC---AUCUGUuGCg -3'
miRNA:   3'- cGCGGCACGuuUGCGaguUAGACA-CG- -5'
6750 3' -51 NC_001875.2 + 124187 0.72 0.823353
Target:  5'- cGUGCCGUGgauguaGAGCGCgUCGgcGUgUGUGCg -3'
miRNA:   3'- -CGCGGCACg-----UUUGCG-AGU--UAgACACG- -5'
6750 3' -51 NC_001875.2 + 122051 0.67 0.974275
Target:  5'- gGCGCCGUGCAAguacaccccggagcGgGUUCAGaugaUGUGg -3'
miRNA:   3'- -CGCGGCACGUU--------------UgCGAGUUag--ACACg -5'
6750 3' -51 NC_001875.2 + 120172 0.7 0.908103
Target:  5'- cGCGUCcuuUGCAGcuGCGCaaCAAUCUGUGUu -3'
miRNA:   3'- -CGCGGc--ACGUU--UGCGa-GUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 118444 0.7 0.919167
Target:  5'- gGC-CCGUGCAAGCGCgccuggugCcGUGCg -3'
miRNA:   3'- -CGcGGCACGUUUGCGaguua---GaCACG- -5'
6750 3' -51 NC_001875.2 + 114586 0.67 0.972306
Target:  5'- cGCGUCG-GCAAACGCggcGUCUuGUuGCc -3'
miRNA:   3'- -CGCGGCaCGUUUGCGaguUAGA-CA-CG- -5'
6750 3' -51 NC_001875.2 + 112826 0.71 0.880564
Target:  5'- cGCGCaCGUGCaAAGCGCguugCGGcCUGcGCg -3'
miRNA:   3'- -CGCG-GCACG-UUUGCGa---GUUaGACaCG- -5'
6750 3' -51 NC_001875.2 + 110812 0.67 0.982207
Target:  5'- aCGCCGcGCAggUGgaCGcgCUGgUGCg -3'
miRNA:   3'- cGCGGCaCGUuuGCgaGUuaGAC-ACG- -5'
6750 3' -51 NC_001875.2 + 109158 0.7 0.894835
Target:  5'- -aGCCGaUGCAugauGCGUUUugAGUUUGUGCa -3'
miRNA:   3'- cgCGGC-ACGUu---UGCGAG--UUAGACACG- -5'
6750 3' -51 NC_001875.2 + 105264 1.15 0.002884
Target:  5'- gGCGCCGUGCAAACGCUCAAUCUGUGCa -3'
miRNA:   3'- -CGCGGCACGUUUGCGAGUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 103924 0.7 0.924949
Target:  5'- uGCGaCCGUGUAAACGCgggcugcgacggCGGcCUGUuGCa -3'
miRNA:   3'- -CGC-GGCACGUUUGCGa-----------GUUaGACA-CG- -5'
6750 3' -51 NC_001875.2 + 102255 0.66 0.986021
Target:  5'- -aGCCGcggGUGAGCGCUCGcgCgcguUGCa -3'
miRNA:   3'- cgCGGCa--CGUUUGCGAGUuaGac--ACG- -5'
6750 3' -51 NC_001875.2 + 101963 0.83 0.295475
Target:  5'- gGCGCCGgugGCGAACGCgacgCAGgcgUUGUGCa -3'
miRNA:   3'- -CGCGGCa--CGUUUGCGa---GUUa--GACACG- -5'
6750 3' -51 NC_001875.2 + 101166 0.7 0.926074
Target:  5'- -gGCCGUGCGcguGGCGCuggUCAAUUacGUGCc -3'
miRNA:   3'- cgCGGCACGU---UUGCG---AGUUAGa-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.