miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 55986 0.68 0.966085
Target:  5'- -gGCCGUGCGcuUGCUCAgauuuugcAUCUG-GUc -3'
miRNA:   3'- cgCGGCACGUuuGCGAGU--------UAGACaCG- -5'
6750 3' -51 NC_001875.2 + 53919 0.69 0.941698
Target:  5'- cGCGCCGuUGCGGGCGCg----UUG-GCg -3'
miRNA:   3'- -CGCGGC-ACGUUUGCGaguuaGACaCG- -5'
6750 3' -51 NC_001875.2 + 85375 0.69 0.946388
Target:  5'- cGCGuuG-GCAAACGCcguuugCGAUUUGcGCg -3'
miRNA:   3'- -CGCggCaCGUUUGCGa-----GUUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 39051 0.69 0.950823
Target:  5'- gGCGCUGUaccGCAAGCGCauggcCA--UUGUGCg -3'
miRNA:   3'- -CGCGGCA---CGUUUGCGa----GUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 37049 0.68 0.955005
Target:  5'- gGCG-CGUGCAcgcgcgcgGACGCggcCAcgCUGUGUu -3'
miRNA:   3'- -CGCgGCACGU--------UUGCGa--GUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 39093 0.68 0.958939
Target:  5'- cGUGCUGUGCcAACGCUgCAGUUcc-GCg -3'
miRNA:   3'- -CGCGGCACGuUUGCGA-GUUAGacaCG- -5'
6750 3' -51 NC_001875.2 + 44456 0.68 0.958939
Target:  5'- gGCGCCGUcggcGCAGuGCGCcaAGUC-GUGCa -3'
miRNA:   3'- -CGCGGCA----CGUU-UGCGagUUAGaCACG- -5'
6750 3' -51 NC_001875.2 + 62674 0.68 0.958939
Target:  5'- uUGCCGUGCcGGCaCUUggUUgUGUGCg -3'
miRNA:   3'- cGCGGCACGuUUGcGAGuuAG-ACACG- -5'
6750 3' -51 NC_001875.2 + 61909 0.68 0.962631
Target:  5'- cGCGCCGUGUcacggcggAAACGCgaaCAAUUUaGcGCg -3'
miRNA:   3'- -CGCGGCACG--------UUUGCGa--GUUAGA-CaCG- -5'
6750 3' -51 NC_001875.2 + 38455 0.69 0.93675
Target:  5'- aGUGCCG-GCGcGCGCUagAAUUgGUGCa -3'
miRNA:   3'- -CGCGGCaCGUuUGCGAg-UUAGaCACG- -5'
6750 3' -51 NC_001875.2 + 42862 0.7 0.928293
Target:  5'- cGCGCCGcaggcGCAGguccgccagcgcaacGCGUUCAAcgucgaggCUGUGCg -3'
miRNA:   3'- -CGCGGCa----CGUU---------------UGCGAGUUa-------GACACG- -5'
6750 3' -51 NC_001875.2 + 16952 0.7 0.926074
Target:  5'- uGCGCCacGUGaccaccAGCGCUUuuuGUUUGUGCa -3'
miRNA:   3'- -CGCGG--CACgu----UUGCGAGu--UAGACACG- -5'
6750 3' -51 NC_001875.2 + 98037 0.73 0.786313
Target:  5'- cGCGCCGUGCGccGACGggCAA---GUGCg -3'
miRNA:   3'- -CGCGGCACGU--UUGCgaGUUagaCACG- -5'
6750 3' -51 NC_001875.2 + 61501 0.73 0.805175
Target:  5'- cGCGCCG-GCucGGCGCcgCAGUCcgcGUGCu -3'
miRNA:   3'- -CGCGGCaCGu-UUGCGa-GUUAGa--CACG- -5'
6750 3' -51 NC_001875.2 + 95991 0.71 0.877592
Target:  5'- cGCGCCGUGCAguacccuGcaaaaggccaccagACGCcCAugCUGUGCg -3'
miRNA:   3'- -CGCGGCACGU-------U--------------UGCGaGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 71647 0.71 0.880564
Target:  5'- cCGCCGgcGCAAuucaacgaaGCGCUguAUUUGUGCc -3'
miRNA:   3'- cGCGGCa-CGUU---------UGCGAguUAGACACG- -5'
6750 3' -51 NC_001875.2 + 129194 0.7 0.908103
Target:  5'- gGCGCCGcaaGUAGACGUguccgugCUGUGCc -3'
miRNA:   3'- -CGCGGCa--CGUUUGCGaguua--GACACG- -5'
6750 3' -51 NC_001875.2 + 126339 0.7 0.908103
Target:  5'- uGCGCgCGUGCGc-CGgUCGugCUGUGCa -3'
miRNA:   3'- -CGCG-GCACGUuuGCgAGUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 67138 0.7 0.920344
Target:  5'- aGCGCCGUGUugcuGCGgCU--GUCUGcGCg -3'
miRNA:   3'- -CGCGGCACGuu--UGC-GAguUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 103924 0.7 0.924949
Target:  5'- uGCGaCCGUGUAAACGCgggcugcgacggCGGcCUGUuGCa -3'
miRNA:   3'- -CGC-GGCACGUUUGCGa-----------GUUaGACA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.