miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 37363 0.74 0.746852
Target:  5'- cGCGCuCGUGCGAACGCgCGcgCcGcUGCa -3'
miRNA:   3'- -CGCG-GCACGUUUGCGaGUuaGaC-ACG- -5'
6750 3' -51 NC_001875.2 + 38270 0.67 0.977658
Target:  5'- cGCGuuGUucaucGUAAACGCgagcacgCGGUUUGUGUu -3'
miRNA:   3'- -CGCggCA-----CGUUUGCGa------GUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 38455 0.69 0.93675
Target:  5'- aGUGCCG-GCGcGCGCUagAAUUgGUGCa -3'
miRNA:   3'- -CGCGGCaCGUuUGCGAg-UUAGaCACG- -5'
6750 3' -51 NC_001875.2 + 38792 0.67 0.975087
Target:  5'- cGCGCCc-GCAAuucgGCGCUgCAAUUgcucgugguUGUGCa -3'
miRNA:   3'- -CGCGGcaCGUU----UGCGA-GUUAG---------ACACG- -5'
6750 3' -51 NC_001875.2 + 39051 0.69 0.950823
Target:  5'- gGCGCUGUaccGCAAGCGCauggcCA--UUGUGCg -3'
miRNA:   3'- -CGCGGCA---CGUUUGCGa----GUuaGACACG- -5'
6750 3' -51 NC_001875.2 + 39093 0.68 0.958939
Target:  5'- cGUGCUGUGCcAACGCUgCAGUUcc-GCg -3'
miRNA:   3'- -CGCGGCACGuUUGCGA-GUUAGacaCG- -5'
6750 3' -51 NC_001875.2 + 41339 0.73 0.804248
Target:  5'- aCGCCGUGCAAgugggccGCGCgCAGUUUGaacGCg -3'
miRNA:   3'- cGCGGCACGUU-------UGCGaGUUAGACa--CG- -5'
6750 3' -51 NC_001875.2 + 41457 0.68 0.969308
Target:  5'- gGCGCCGguugcgGCGcGCGCggcguGUCUuGUGUg -3'
miRNA:   3'- -CGCGGCa-----CGUuUGCGagu--UAGA-CACG- -5'
6750 3' -51 NC_001875.2 + 42246 0.7 0.920344
Target:  5'- uCGaCCGUGCAAugGCgcacguuaagUUGAUUUGUGUa -3'
miRNA:   3'- cGC-GGCACGUUugCG----------AGUUAGACACG- -5'
6750 3' -51 NC_001875.2 + 42862 0.7 0.928293
Target:  5'- cGCGCCGcaggcGCAGguccgccagcgcaacGCGUUCAAcgucgaggCUGUGCg -3'
miRNA:   3'- -CGCGGCa----CGUU---------------UGCGAGUUa-------GACACG- -5'
6750 3' -51 NC_001875.2 + 44010 0.67 0.982207
Target:  5'- gGCGCCGUGCccAGCGUg----CUGUaccGCa -3'
miRNA:   3'- -CGCGGCACGu-UUGCGaguuaGACA---CG- -5'
6750 3' -51 NC_001875.2 + 44270 0.68 0.970533
Target:  5'- uGCGCCGcuguuuuuUGCAguuucauaguuucggAGCGCuuccUCAAUCUGgGCc -3'
miRNA:   3'- -CGCGGC--------ACGU---------------UUGCG----AGUUAGACaCG- -5'
6750 3' -51 NC_001875.2 + 44456 0.68 0.958939
Target:  5'- gGCGCCGUcggcGCAGuGCGCcaAGUC-GUGCa -3'
miRNA:   3'- -CGCGGCA----CGUU-UGCGagUUAGaCACG- -5'
6750 3' -51 NC_001875.2 + 44605 0.7 0.926074
Target:  5'- -gGCCcaGCGcGCGCUCGGggCUGUGUa -3'
miRNA:   3'- cgCGGcaCGUuUGCGAGUUa-GACACG- -5'
6750 3' -51 NC_001875.2 + 45736 0.7 0.894835
Target:  5'- cCGCCGagcUGgAAAUGCUCAAcgUGUGCc -3'
miRNA:   3'- cGCGGC---ACgUUUGCGAGUUagACACG- -5'
6750 3' -51 NC_001875.2 + 46934 0.66 0.984201
Target:  5'- aGCcCCGUGCu-GCGCUacgcCAAggUUGUGCu -3'
miRNA:   3'- -CGcGGCACGuuUGCGA----GUUa-GACACG- -5'
6750 3' -51 NC_001875.2 + 47764 0.66 0.989175
Target:  5'- cUGCCGcuUGguAACGCaccCGA-CUGUGCa -3'
miRNA:   3'- cGCGGC--ACguUUGCGa--GUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 48629 0.67 0.977658
Target:  5'- gGUGCCGcUGCu-GCGCagcCAGUCgcugGUGUg -3'
miRNA:   3'- -CGCGGC-ACGuuUGCGa--GUUAGa---CACG- -5'
6750 3' -51 NC_001875.2 + 51543 0.72 0.823353
Target:  5'- cGCGCUG-GCGAcgGCGCUC-GUCaaGUGCg -3'
miRNA:   3'- -CGCGGCaCGUU--UGCGAGuUAGa-CACG- -5'
6750 3' -51 NC_001875.2 + 52107 0.66 0.987676
Target:  5'- aGCGCCGaa-GAGCGCgaCAuUCUGcGCa -3'
miRNA:   3'- -CGCGGCacgUUUGCGa-GUuAGACaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.