Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6750 | 3' | -51 | NC_001875.2 | + | 37121 | 0.66 | 0.987676 |
Target: 5'- gGCGCCGcGCcGGCGUUUGcGUCUuuccgcGUGCg -3' miRNA: 3'- -CGCGGCaCGuUUGCGAGU-UAGA------CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 6944 | 0.66 | 0.987676 |
Target: 5'- cGCGUCGUGCGuGCGCcgCGAcaUCgccacgGCg -3' miRNA: 3'- -CGCGGCACGUuUGCGa-GUU--AGaca---CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 131483 | 0.66 | 0.986021 |
Target: 5'- cGCGCggccaaCGUGCAGAuCGa-CAGUCUGcgGCg -3' miRNA: 3'- -CGCG------GCACGUUU-GCgaGUUAGACa-CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 77675 | 0.67 | 0.980029 |
Target: 5'- aGCGCCGcUGUccGAGCGCgu-AUUUGcGCg -3' miRNA: 3'- -CGCGGC-ACG--UUUGCGaguUAGACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 26222 | 0.67 | 0.980029 |
Target: 5'- uGCGCaccacaCGUGCAAcCGCUCuuggcgCUGcgGCg -3' miRNA: 3'- -CGCG------GCACGUUuGCGAGuua---GACa-CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 65128 | 0.67 | 0.982207 |
Target: 5'- uCGCCGUGCAguacAugGUgucggaggCGGUCacGUGCa -3' miRNA: 3'- cGCGGCACGU----UugCGa-------GUUAGa-CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 34760 | 0.67 | 0.977658 |
Target: 5'- -aGCCGUGCG--UGUUCAAUgUaaGUGCc -3' miRNA: 3'- cgCGGCACGUuuGCGAGUUAgA--CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 32826 | 0.67 | 0.977658 |
Target: 5'- gGCGCCGcuUGCGAGCGUggcacCAAaacCUGgUGCc -3' miRNA: 3'- -CGCGGC--ACGUUUGCGa----GUUa--GAC-ACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 69205 | 0.67 | 0.97741 |
Target: 5'- gGCGCCGacgGCcaguACGCUuguucgggcgacgCGcgCUGUGCc -3' miRNA: 3'- -CGCGGCa--CGuu--UGCGA-------------GUuaGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 97499 | 0.67 | 0.972306 |
Target: 5'- uGCGCCGcGCGcuUGCUC--UC-GUGCg -3' miRNA: 3'- -CGCGGCaCGUuuGCGAGuuAGaCACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 114586 | 0.67 | 0.972306 |
Target: 5'- cGCGUCG-GCAAACGCggcGUCUuGUuGCc -3' miRNA: 3'- -CGCGGCaCGUUUGCGaguUAGA-CA-CG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 130782 | 0.67 | 0.980029 |
Target: 5'- cGCGCgGUcGCcaacguuGCGCcCAAcgCUGUGCg -3' miRNA: 3'- -CGCGgCA-CGuu-----UGCGaGUUa-GACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 66632 | 0.67 | 0.975087 |
Target: 5'- -aGCUGUGCAAGCGCaugCuggagCUGcGCu -3' miRNA: 3'- cgCGGCACGUUUGCGa--Guua--GACaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 38792 | 0.67 | 0.975087 |
Target: 5'- cGCGCCc-GCAAuucgGCGCUgCAAUUgcucgugguUGUGCa -3' miRNA: 3'- -CGCGGcaCGUU----UGCGA-GUUAG---------ACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 82199 | 0.67 | 0.975087 |
Target: 5'- gGCGCCG-GCGGcCGCUCGuGUCgccGCu -3' miRNA: 3'- -CGCGGCaCGUUuGCGAGU-UAGacaCG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 38270 | 0.67 | 0.977658 |
Target: 5'- cGCGuuGUucaucGUAAACGCgagcacgCGGUUUGUGUu -3' miRNA: 3'- -CGCggCA-----CGUUUGCGa------GUUAGACACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 10058 | 0.67 | 0.972306 |
Target: 5'- aCGCCGUGCAgGAUGaaugCGGUCgUGUGg -3' miRNA: 3'- cGCGGCACGU-UUGCga--GUUAG-ACACg -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 97726 | 0.67 | 0.975087 |
Target: 5'- cGCGCUagaccGCGAGCGCgCGcgCUcGUGCa -3' miRNA: 3'- -CGCGGca---CGUUUGCGaGUuaGA-CACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 59912 | 0.67 | 0.975087 |
Target: 5'- gGCGCgGUGgAuaacguuACGCUCA-UCaGUGCc -3' miRNA: 3'- -CGCGgCACgUu------UGCGAGUuAGaCACG- -5' |
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6750 | 3' | -51 | NC_001875.2 | + | 84044 | 0.67 | 0.97614 |
Target: 5'- gGCGCUGUGCuucaaaaaaaaggaaAAGUGCaCAGUCggGUGCg -3' miRNA: 3'- -CGCGGCACG---------------UUUGCGaGUUAGa-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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