miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 34016 0.67 0.689579
Target:  5'- cCAGCACGuuGGaaaUguAGCGUC-GCUCg -3'
miRNA:   3'- -GUCGUGCggCUg--AguUCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 35413 0.69 0.546312
Target:  5'- gAGCgACGCCGAC--AAGCGCgAGUUUg -3'
miRNA:   3'- gUCG-UGCGGCUGagUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 36104 0.71 0.458947
Target:  5'- gCAGCACG-CGGCggcGGCGCC-GCUCa -3'
miRNA:   3'- -GUCGUGCgGCUGaguUCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 37568 0.7 0.536299
Target:  5'- gCGGCaucgaguggauGCGCCGGCgCGAGCGCC-GCg- -3'
miRNA:   3'- -GUCG-----------UGCGGCUGaGUUCGCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 38177 0.66 0.749403
Target:  5'- gAGCGC-CCGACgCAGGuCGUCAacguGCUCg -3'
miRNA:   3'- gUCGUGcGGCUGaGUUC-GCGGU----CGAG- -5'
6750 5' -58.4 NC_001875.2 + 38449 0.7 0.52536
Target:  5'- gCAGCAagUGCCGGCgcgCGcuagaauuggugcAGCGCguGCUCg -3'
miRNA:   3'- -GUCGU--GCGGCUGa--GU-------------UCGCGguCGAG- -5'
6750 5' -58.4 NC_001875.2 + 41120 0.66 0.728789
Target:  5'- -cGCACGUCGugUCGcgcuugaccggcgGccGCGCCGGCa- -3'
miRNA:   3'- guCGUGCGGCugAGU-------------U--CGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 41467 0.67 0.698712
Target:  5'- gCGGCGCGCgCGGCgugucuuguguggUCu-GCGCCGGC-Cg -3'
miRNA:   3'- -GUCGUGCG-GCUG-------------AGuuCGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 41814 0.68 0.627999
Target:  5'- -cGCGCGCCGGCgcc-GCGgCCAGUUg -3'
miRNA:   3'- guCGUGCGGCUGaguuCGC-GGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 42568 0.68 0.627999
Target:  5'- cCAGcCGCGCCaggucGGCgcacgCGcGCGUCAGCUCg -3'
miRNA:   3'- -GUC-GUGCGG-----CUGa----GUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 42858 0.72 0.413725
Target:  5'- cCGGCGCGCCGcagGCgCAGGUccGCCAGCg- -3'
miRNA:   3'- -GUCGUGCGGC---UGaGUUCG--CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 42935 0.66 0.739639
Target:  5'- gCAGCGCGCCa----AAG-GCCAGCUUg -3'
miRNA:   3'- -GUCGUGCGGcugagUUCgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 43816 0.66 0.729779
Target:  5'- aCGGCuuUGCCGGCU--AGCGCaAGCUUg -3'
miRNA:   3'- -GUCGu-GCGGCUGAguUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 45446 0.68 0.648602
Target:  5'- -uGCGCGUCGaACUC-GGCGCuCGGCg- -3'
miRNA:   3'- guCGUGCGGC-UGAGuUCGCG-GUCGag -5'
6750 5' -58.4 NC_001875.2 + 45594 0.75 0.282282
Target:  5'- cCAGCGgGcCCGACUCcGGCGCgCAGCa- -3'
miRNA:   3'- -GUCGUgC-GGCUGAGuUCGCG-GUCGag -5'
6750 5' -58.4 NC_001875.2 + 48376 0.75 0.275676
Target:  5'- -cGCGCGCCcguccGACgcggcgaCAGGUGCCGGCUCg -3'
miRNA:   3'- guCGUGCGG-----CUGa------GUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 49588 0.67 0.679385
Target:  5'- -uGCGCGCCGAC--GAGCGCuaccacCAGCg- -3'
miRNA:   3'- guCGUGCGGCUGagUUCGCG------GUCGag -5'
6750 5' -58.4 NC_001875.2 + 49854 0.67 0.669151
Target:  5'- -uGCGCGCCGGC-CGGcGCGCCuugccGGCg- -3'
miRNA:   3'- guCGUGCGGCUGaGUU-CGCGG-----UCGag -5'
6750 5' -58.4 NC_001875.2 + 50509 0.66 0.762896
Target:  5'- cCAGCGCGCCGcGCggCAcgaugacgaggaggaGGCGCCgccGGCg- -3'
miRNA:   3'- -GUCGUGCGGC-UGa-GU---------------UCGCGG---UCGag -5'
6750 5' -58.4 NC_001875.2 + 50666 0.66 0.729779
Target:  5'- cCAGCauGCGCUGGCcgUCGgcccgaaaGGCGCCuGCUUu -3'
miRNA:   3'- -GUCG--UGCGGCUG--AGU--------UCGCGGuCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.