miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 18162 0.68 0.60638
Target:  5'- gCGGCGCGCgCGACgccgcCAcuguggcGGUGCCGGCg- -3'
miRNA:   3'- -GUCGUGCG-GCUGa----GU-------UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 18240 0.71 0.431488
Target:  5'- gCGGCccgcCGCCGACUCGAaCGCCGuGCUg -3'
miRNA:   3'- -GUCGu---GCGGCUGAGUUcGCGGU-CGAg -5'
6750 5' -58.4 NC_001875.2 + 18770 0.66 0.739639
Target:  5'- -cGCGCGUCGcCaUCAAa-GCCAGCUCu -3'
miRNA:   3'- guCGUGCGGCuG-AGUUcgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 19849 0.7 0.487309
Target:  5'- aCAGCGCGCaaGACUCGgccgcgucgcGGCGCgGGCg- -3'
miRNA:   3'- -GUCGUGCGg-CUGAGU----------UCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 20744 0.69 0.584847
Target:  5'- -uGCACGCCGcaacaaaagguuUUCAcGGCGCCGGCgUCg -3'
miRNA:   3'- guCGUGCGGCu-----------GAGU-UCGCGGUCG-AG- -5'
6750 5' -58.4 NC_001875.2 + 21299 0.67 0.709813
Target:  5'- uCAGCugGCagaaaaGCUCAagaAGCGCCAGgUg -3'
miRNA:   3'- -GUCGugCGgc----UGAGU---UCGCGGUCgAg -5'
6750 5' -58.4 NC_001875.2 + 21957 0.68 0.617698
Target:  5'- gCGGCGCGgggaugggCGGCgCcAGCGCCAGCUUg -3'
miRNA:   3'- -GUCGUGCg-------GCUGaGuUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 23171 0.67 0.693643
Target:  5'- gGGCACGgCGGCUgCGGGCacgGCCguuggcgguugcaguAGCUCa -3'
miRNA:   3'- gUCGUGCgGCUGA-GUUCG---CGG---------------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 23244 0.67 0.699724
Target:  5'- gCAGCugGUcggagaacagCGACgggCAgcgcAGCGCCAGCa- -3'
miRNA:   3'- -GUCGugCG----------GCUGa--GU----UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 23824 0.68 0.642423
Target:  5'- gGGCGCGCCGugUCucuggcGGGUgggguuaaagugcucGCCAGCg- -3'
miRNA:   3'- gUCGUGCGGCugAG------UUCG---------------CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 24003 0.69 0.546312
Target:  5'- -cGCGCGUCGcaagGCgcacCGGGCGCgGGCUCg -3'
miRNA:   3'- guCGUGCGGC----UGa---GUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 27156 0.67 0.658887
Target:  5'- uUAGCGacauUGCCGACauggcCAAGgGCgAGCUCa -3'
miRNA:   3'- -GUCGU----GCGGCUGa----GUUCgCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 29268 0.7 0.496947
Target:  5'- gCGGC-CGCCGACc---GCGCCGGCg- -3'
miRNA:   3'- -GUCGuGCGGCUGaguuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 30637 0.67 0.658887
Target:  5'- aAGC-CGUCGACaaacggcaagUUggGCGCCGGCa- -3'
miRNA:   3'- gUCGuGCGGCUG----------AGuuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 31124 0.66 0.758102
Target:  5'- -cGCGCGCCGcagcaaugugcauGCUUAAcGCGCCGcGCg- -3'
miRNA:   3'- guCGUGCGGC-------------UGAGUU-CGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 31807 0.67 0.709813
Target:  5'- cCGGCACGaCGAacgcggCAAGCGCCGcGUUUg -3'
miRNA:   3'- -GUCGUGCgGCUga----GUUCGCGGU-CGAG- -5'
6750 5' -58.4 NC_001875.2 + 31867 0.7 0.536299
Target:  5'- -cGCGCGUgGACU--GGCGCCGGUUg -3'
miRNA:   3'- guCGUGCGgCUGAguUCGCGGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 32104 0.69 0.590987
Target:  5'- aCAGCACGagcaCGACaaggcgcgcacuugCGAGCGCCGcauagcGCUCa -3'
miRNA:   3'- -GUCGUGCg---GCUGa-------------GUUCGCGGU------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 32773 0.67 0.668126
Target:  5'- gAGCGCGUccucgcgCGGCgugggCGGGCGCCgcgccggcaAGCUCg -3'
miRNA:   3'- gUCGUGCG-------GCUGa----GUUCGCGG---------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 33199 0.75 0.256601
Target:  5'- cCAGCGCcucgcuGCCGGCaaacgCGGGCGCgGGCUCg -3'
miRNA:   3'- -GUCGUG------CGGCUGa----GUUCGCGgUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.