miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 365 0.67 0.699724
Target:  5'- cUAGCACGCCGAC---GGCGuaCCAGUc- -3'
miRNA:   3'- -GUCGUGCGGCUGaguUCGC--GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 2298 0.7 0.536299
Target:  5'- -cGCGCGCCGuggccgcgcgcaGCUCG---GCCAGCUCg -3'
miRNA:   3'- guCGUGCGGC------------UGAGUucgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 2648 0.66 0.76861
Target:  5'- aCGGaCACGUCuACUUGcGGCGCCGGCg- -3'
miRNA:   3'- -GUC-GUGCGGcUGAGU-UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 3071 0.69 0.58587
Target:  5'- gCGGCGCGCCGgggucgcccacgGCgugCAcGCGCCggggcgcGGCUCg -3'
miRNA:   3'- -GUCGUGCGGC------------UGa--GUuCGCGG-------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 4288 0.68 0.617698
Target:  5'- gCAGCGCGCCGA-UCAAGCaCgCGGuCUUg -3'
miRNA:   3'- -GUCGUGCGGCUgAGUUCGcG-GUC-GAG- -5'
6750 5' -58.4 NC_001875.2 + 4429 0.71 0.468305
Target:  5'- gCGGCAUGCUGACgCGcGcCGCCAGCa- -3'
miRNA:   3'- -GUCGUGCGGCUGaGUuC-GCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 5502 0.73 0.371353
Target:  5'- aCAGCACGaCCGGCgCAcGCGCgCAGUUUa -3'
miRNA:   3'- -GUCGUGC-GGCUGaGUuCGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 5828 0.67 0.658887
Target:  5'- cCAGCGcCGCCGAuCUgGAcGCGCCcGCg- -3'
miRNA:   3'- -GUCGU-GCGGCU-GAgUU-CGCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 5977 0.68 0.648602
Target:  5'- -uGguCGCCGACggCAGGC-CCAGCg- -3'
miRNA:   3'- guCguGCGGCUGa-GUUCGcGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 6553 0.7 0.540297
Target:  5'- gCGGCGCGucaacaagguguaccCCGAC---AGCGCCAGCUUc -3'
miRNA:   3'- -GUCGUGC---------------GGCUGaguUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 6620 0.67 0.709813
Target:  5'- -cGCACGCgGugUaCucGUGCCAGCg- -3'
miRNA:   3'- guCGUGCGgCugA-GuuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 7800 0.66 0.76861
Target:  5'- -uGcCACGUCGuGCUUucGCGCCGGUUUa -3'
miRNA:   3'- guC-GUGCGGC-UGAGuuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 8221 0.67 0.708807
Target:  5'- aCGGCGCaGUCGACUUcgaucacuuuuuuGGGCaGCCGGCg- -3'
miRNA:   3'- -GUCGUG-CGGCUGAG-------------UUCG-CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 9049 0.69 0.546312
Target:  5'- cCGGcCGCGCCGGUUUccGCGCCGGUUUc -3'
miRNA:   3'- -GUC-GUGCGGCUGAGuuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 9125 0.75 0.282282
Target:  5'- -cGgACGCCgugGACUCGcGCGCCAGUUCg -3'
miRNA:   3'- guCgUGCGG---CUGAGUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 11100 0.7 0.496947
Target:  5'- aCGGC-CGCCGuCUC-GGCGCCgcAGCUg -3'
miRNA:   3'- -GUCGuGCGGCuGAGuUCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 11937 0.75 0.289012
Target:  5'- gCGGCGCGCCGACUgugCGcGCGaCCGGCg- -3'
miRNA:   3'- -GUCGUGCGGCUGA---GUuCGC-GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 12300 0.66 0.729779
Target:  5'- cCGGCACGCCGccgugugcguGgUCAAcGCGcCCGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGC----------UgAGUU-CGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 14518 0.66 0.719834
Target:  5'- -cGcCGCGCCGugUCAAGcCGCUcaacaagagugAGCUg -3'
miRNA:   3'- guC-GUGCGGCugAGUUC-GCGG-----------UCGAg -5'
6750 5' -58.4 NC_001875.2 + 15920 0.68 0.621817
Target:  5'- cCGGCACcggcaacaugacccaGCUGGCg-GGGCGCCAGCa- -3'
miRNA:   3'- -GUCGUG---------------CGGCUGagUUCGCGGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.