miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 95406 0.7 0.520415
Target:  5'- gCAGCGCGCCGGCgucgCAaagguaaggccucgcGGCGCCcGUg- -3'
miRNA:   3'- -GUCGUGCGGCUGa---GU---------------UCGCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 76109 0.72 0.42255
Target:  5'- gGGCGCGCCGuagcGCUCcuuuuccAGCGCCAcgucaaugcGCUCa -3'
miRNA:   3'- gUCGUGCGGC----UGAGu------UCGCGGU---------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 98402 0.71 0.435094
Target:  5'- uGGCggACGCgGACgUuguguuucaagcggaCGAGCGCCAGCUCa -3'
miRNA:   3'- gUCG--UGCGgCUG-A---------------GUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 71604 0.71 0.449689
Target:  5'- aGGCgugGCgGACaUCAAGCGCgAGCUCg -3'
miRNA:   3'- gUCGug-CGgCUG-AGUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 85672 0.71 0.458947
Target:  5'- gGGCGCGCCGGC-CugcAGCGacucgaCCAGCUUg -3'
miRNA:   3'- gUCGUGCGGCUGaGu--UCGC------GGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 59119 0.71 0.468305
Target:  5'- -cGCugGCCGACgcgCAAGCGCaauuaaCGGCg- -3'
miRNA:   3'- guCGugCGGCUGa--GUUCGCG------GUCGag -5'
6750 5' -58.4 NC_001875.2 + 4429 0.71 0.468305
Target:  5'- gCGGCAUGCUGACgCGcGcCGCCAGCa- -3'
miRNA:   3'- -GUCGUGCGGCUGaGUuC-GCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 11100 0.7 0.496947
Target:  5'- aCGGC-CGCCGuCUC-GGCGCCgcAGCUg -3'
miRNA:   3'- -GUCGuGCGGCuGAGuUCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 29268 0.7 0.496947
Target:  5'- gCGGC-CGCCGACc---GCGCCGGCg- -3'
miRNA:   3'- -GUCGuGCGGCUGaguuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 66085 0.72 0.42255
Target:  5'- cCAGC-CGCCGGCUCAGGuCGCUcGUg- -3'
miRNA:   3'- -GUCGuGCGGCUGAGUUC-GCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 42858 0.72 0.413725
Target:  5'- cCGGCGCGCCGcagGCgCAGGUccGCCAGCg- -3'
miRNA:   3'- -GUCGUGCGGC---UGaGUUCG--CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 117356 0.73 0.363241
Target:  5'- cCGGCGgGCCGGCUgGccgucggggaGGCGCCgAGCUUg -3'
miRNA:   3'- -GUCGUgCGGCUGAgU----------UCGCGG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 61499 0.8 0.136889
Target:  5'- -uGCGCGCCGGCUC-GGCGCCGcaguccgcguGCUCg -3'
miRNA:   3'- guCGUGCGGCUGAGuUCGCGGU----------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 66057 0.76 0.227229
Target:  5'- -cGCGCGCCGACgcCGcGCGCguGCUCg -3'
miRNA:   3'- guCGUGCGGCUGa-GUuCGCGguCGAG- -5'
6750 5' -58.4 NC_001875.2 + 33199 0.75 0.256601
Target:  5'- cCAGCGCcucgcuGCCGGCaaacgCGGGCGCgGGCUCg -3'
miRNA:   3'- -GUCGUG------CGGCUGa----GUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 64761 0.75 0.269195
Target:  5'- -uGCGCGCguaGAuCUCGcGCGCCAGCUCc -3'
miRNA:   3'- guCGUGCGg--CU-GAGUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 48376 0.75 0.275676
Target:  5'- -cGCGCGCCcguccGACgcggcgaCAGGUGCCGGCUCg -3'
miRNA:   3'- guCGUGCGG-----CUGa------GUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 45594 0.75 0.282282
Target:  5'- cCAGCGgGcCCGACUCcGGCGCgCAGCa- -3'
miRNA:   3'- -GUCGUgC-GGCUGAGuUCGCG-GUCGag -5'
6750 5' -58.4 NC_001875.2 + 11937 0.75 0.289012
Target:  5'- gCGGCGCGCCGACUgugCGcGCGaCCGGCg- -3'
miRNA:   3'- -GUCGUGCGGCUGA---GUuCGC-GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 100594 0.73 0.363241
Target:  5'- -cGUACGCgGGC-CGGGCGCCGGC-Cg -3'
miRNA:   3'- guCGUGCGgCUGaGUUCGCGGUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.