miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 105302 1.09 0.001125
Target:  5'- cCAGCACGCCGACUCAAGCGCCAGCUCa -3'
miRNA:   3'- -GUCGUGCGGCUGAGUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 65784 0.8 0.129939
Target:  5'- gCGGCGCGUCGuCgUUGAGCGCCAGCUUg -3'
miRNA:   3'- -GUCGUGCGGCuG-AGUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 61499 0.8 0.136889
Target:  5'- -uGCGCGCCGGCUC-GGCGCCGcaguccgcguGCUCg -3'
miRNA:   3'- guCGUGCGGCUGAGuUCGCGGU----------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 53249 0.78 0.181543
Target:  5'- aAGCACGCCGACUCAAGCaaaAGCg- -3'
miRNA:   3'- gUCGUGCGGCUGAGUUCGcggUCGag -5'
6750 5' -58.4 NC_001875.2 + 61587 0.77 0.190936
Target:  5'- uUAGCgGCGaCGGCUCGGGCGCCGGCg- -3'
miRNA:   3'- -GUCG-UGCgGCUGAGUUCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 66057 0.76 0.227229
Target:  5'- -cGCGCGCCGACgcCGcGCGCguGCUCg -3'
miRNA:   3'- guCGUGCGGCUGa-GUuCGCGguCGAG- -5'
6750 5' -58.4 NC_001875.2 + 33199 0.75 0.256601
Target:  5'- cCAGCGCcucgcuGCCGGCaaacgCGGGCGCgGGCUCg -3'
miRNA:   3'- -GUCGUG------CGGCUGa----GUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 64761 0.75 0.269195
Target:  5'- -uGCGCGCguaGAuCUCGcGCGCCAGCUCc -3'
miRNA:   3'- guCGUGCGg--CU-GAGUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 48376 0.75 0.275676
Target:  5'- -cGCGCGCCcguccGACgcggcgaCAGGUGCCGGCUCg -3'
miRNA:   3'- guCGUGCGG-----CUGa------GUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 45594 0.75 0.282282
Target:  5'- cCAGCGgGcCCGACUCcGGCGCgCAGCa- -3'
miRNA:   3'- -GUCGUgC-GGCUGAGuUCGCG-GUCGag -5'
6750 5' -58.4 NC_001875.2 + 9125 0.75 0.282282
Target:  5'- -cGgACGCCgugGACUCGcGCGCCAGUUCg -3'
miRNA:   3'- guCgUGCGG---CUGAGUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 11937 0.75 0.289012
Target:  5'- gCGGCGCGCCGACUgugCGcGCGaCCGGCg- -3'
miRNA:   3'- -GUCGUGCGGCUGA---GUuCGC-GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 89078 0.74 0.295867
Target:  5'- -cGCACgGCCGACcCGAGCGCgCcGCUCa -3'
miRNA:   3'- guCGUG-CGGCUGaGUUCGCG-GuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 98052 0.74 0.309956
Target:  5'- uCGGCAUGCUGA-UCGAGCGCCAcaaCUCg -3'
miRNA:   3'- -GUCGUGCGGCUgAGUUCGCGGUc--GAG- -5'
6750 5' -58.4 NC_001875.2 + 55865 0.73 0.355253
Target:  5'- gAGCACGCCGACUCGA-CuaCGGCg- -3'
miRNA:   3'- gUCGUGCGGCUGAGUUcGcgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 100594 0.73 0.363241
Target:  5'- -cGUACGCgGGC-CGGGCGCCGGC-Cg -3'
miRNA:   3'- guCGUGCGgCUGaGUUCGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 117356 0.73 0.363241
Target:  5'- cCGGCGgGCCGGCUgGccgucggggaGGCGCCgAGCUUg -3'
miRNA:   3'- -GUCGUgCGGCUGAgU----------UCGCGG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 70333 0.73 0.371353
Target:  5'- gAGCACGCgGACUgcGGCGCCgAGC-Cg -3'
miRNA:   3'- gUCGUGCGgCUGAguUCGCGG-UCGaG- -5'
6750 5' -58.4 NC_001875.2 + 5502 0.73 0.371353
Target:  5'- aCAGCACGaCCGGCgCAcGCGCgCAGUUUa -3'
miRNA:   3'- -GUCGUGC-GGCUGaGUuCGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 105825 0.72 0.379587
Target:  5'- aCAGCAUGCUGACcgccCAGGCGCCgacGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGCUGa---GUUCGCGG---UCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.