miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 85289 0.66 0.749403
Target:  5'- aCGGUuuGCGCgGGCggcgCGGGCGCgGGCa- -3'
miRNA:   3'- -GUCG--UGCGgCUGa---GUUCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 102425 0.66 0.729779
Target:  5'- -cGCuCGCCGuuGC-CGAGCGCCGGgUUg -3'
miRNA:   3'- guCGuGCGGC--UGaGUUCGCGGUCgAG- -5'
6750 5' -58.4 NC_001875.2 + 79118 0.66 0.719834
Target:  5'- aCGGCguuGUCGGCggCGGGCGCCgcggcgGGCUCg -3'
miRNA:   3'- -GUCGug-CGGCUGa-GUUCGCGG------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 122039 0.66 0.729779
Target:  5'- gCAGC-CGCCGAU---GGCGCCGuGCa- -3'
miRNA:   3'- -GUCGuGCGGCUGaguUCGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 75622 0.66 0.729779
Target:  5'- uCGGCguugGCGUCGGCguuGGCGUCGGCgUCg -3'
miRNA:   3'- -GUCG----UGCGGCUGaguUCGCGGUCG-AG- -5'
6750 5' -58.4 NC_001875.2 + 60191 0.66 0.728789
Target:  5'- aCAGCgcuucguugaauuGCGCCGGCggCAgauugaAGCGgCCgAGCUCg -3'
miRNA:   3'- -GUCG-------------UGCGGCUGa-GU------UCGC-GG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 80634 0.66 0.719834
Target:  5'- -cGCGCGCuCGACgggcGGCGCCAGa-- -3'
miRNA:   3'- guCGUGCG-GCUGagu-UCGCGGUCgag -5'
6750 5' -58.4 NC_001875.2 + 41120 0.66 0.728789
Target:  5'- -cGCACGUCGugUCGcgcuugaccggcgGccGCGCCGGCa- -3'
miRNA:   3'- guCGUGCGGCugAGU-------------U--CGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 12300 0.66 0.729779
Target:  5'- cCGGCACGCCGccgugugcguGgUCAAcGCGcCCGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGC----------UgAGUU-CGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 114680 0.66 0.729779
Target:  5'- uCAGCgGCGaCCGugcuuUUCGGGUGCCAacGCUCu -3'
miRNA:   3'- -GUCG-UGC-GGCu----GAGUUCGCGGU--CGAG- -5'
6750 5' -58.4 NC_001875.2 + 42935 0.66 0.739639
Target:  5'- gCAGCGCGCCa----AAG-GCCAGCUUg -3'
miRNA:   3'- -GUCGUGCGGcugagUUCgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 98652 0.66 0.73669
Target:  5'- gCAGCgagGCGCUGGaauguaaggugugcCUCGAGCGgCAGCg- -3'
miRNA:   3'- -GUCG---UGCGGCU--------------GAGUUCGCgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 98042 0.66 0.758102
Target:  5'- -cGUGCGCCGACgggCAAGUGCgccuagaccacccCGGcCUCa -3'
miRNA:   3'- guCGUGCGGCUGa--GUUCGCG-------------GUC-GAG- -5'
6750 5' -58.4 NC_001875.2 + 92185 0.66 0.739639
Target:  5'- -cGCGcCGCCGGCcCAAacucGCGCgCGGUUCg -3'
miRNA:   3'- guCGU-GCGGCUGaGUU----CGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 119637 0.66 0.729779
Target:  5'- cCGGCACGCUGAacgcguUUUAcGCGCCcaAGCUg -3'
miRNA:   3'- -GUCGUGCGGCU------GAGUuCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 50666 0.66 0.729779
Target:  5'- cCAGCauGCGCUGGCcgUCGgcccgaaaGGCGCCuGCUUu -3'
miRNA:   3'- -GUCG--UGCGGCUG--AGU--------UCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 69251 0.66 0.738657
Target:  5'- aCGGCGCGCugggccgCGGCUCGAGCcguGgCGGCg- -3'
miRNA:   3'- -GUCGUGCG-------GCUGAGUUCG---CgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 18770 0.66 0.739639
Target:  5'- -cGCGCGUCGcCaUCAAa-GCCAGCUCu -3'
miRNA:   3'- guCGUGCGGCuG-AGUUcgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 14518 0.66 0.719834
Target:  5'- -cGcCGCGCCGugUCAAGcCGCUcaacaagagugAGCUg -3'
miRNA:   3'- guC-GUGCGGCugAGUUC-GCGG-----------UCGAg -5'
6750 5' -58.4 NC_001875.2 + 43816 0.66 0.729779
Target:  5'- aCGGCuuUGCCGGCU--AGCGCaAGCUUg -3'
miRNA:   3'- -GUCGu-GCGGCUGAguUCGCGgUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.