miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 54874 0.66 0.76861
Target:  5'- gCAGCacguugcucccgACGCgGACUCGucCGCCAGUUg -3'
miRNA:   3'- -GUCG------------UGCGgCUGAGUucGCGGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 92185 0.66 0.739639
Target:  5'- -cGCGcCGCCGGCcCAAacucGCGCgCGGUUCg -3'
miRNA:   3'- guCGU-GCGGCUGaGUU----CGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 60191 0.66 0.728789
Target:  5'- aCAGCgcuucguugaauuGCGCCGGCggCAgauugaAGCGgCCgAGCUCg -3'
miRNA:   3'- -GUCG-------------UGCGGCUGa-GU------UCGC-GG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 69251 0.66 0.738657
Target:  5'- aCGGCGCGCugggccgCGGCUCGAGCcguGgCGGCg- -3'
miRNA:   3'- -GUCGUGCG-------GCUGAGUUCG---CgGUCGag -5'
6750 5' -58.4 NC_001875.2 + 57687 0.66 0.743557
Target:  5'- aAGCugG-CGGCggCGGGCGCCgcgcccucgaacuccAGCUCu -3'
miRNA:   3'- gUCGugCgGCUGa-GUUCGCGG---------------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 18770 0.66 0.739639
Target:  5'- -cGCGCGUCGcCaUCAAa-GCCAGCUCu -3'
miRNA:   3'- guCGUGCGGCuG-AGUUcgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 72711 0.66 0.759064
Target:  5'- -uGCGCGCCGuuaauugcGCUUgcGCGUCGGC-Ca -3'
miRNA:   3'- guCGUGCGGC--------UGAGuuCGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 42935 0.66 0.739639
Target:  5'- gCAGCGCGCCa----AAG-GCCAGCUUg -3'
miRNA:   3'- -GUCGUGCGGcugagUUCgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 14518 0.66 0.719834
Target:  5'- -cGcCGCGCCGugUCAAGcCGCUcaacaagagugAGCUg -3'
miRNA:   3'- guC-GUGCGGCugAGUUC-GCGG-----------UCGAg -5'
6750 5' -58.4 NC_001875.2 + 122039 0.66 0.729779
Target:  5'- gCAGC-CGCCGAU---GGCGCCGuGCa- -3'
miRNA:   3'- -GUCGuGCGGCUGaguUCGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 85289 0.66 0.749403
Target:  5'- aCGGUuuGCGCgGGCggcgCGGGCGCgGGCa- -3'
miRNA:   3'- -GUCG--UGCGgCUGa---GUUCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 38177 0.66 0.749403
Target:  5'- gAGCGC-CCGACgCAGGuCGUCAacguGCUCg -3'
miRNA:   3'- gUCGUGcGGCUGaGUUC-GCGGU----CGAG- -5'
6750 5' -58.4 NC_001875.2 + 5828 0.67 0.658887
Target:  5'- cCAGCGcCGCCGAuCUgGAcGCGCCcGCg- -3'
miRNA:   3'- -GUCGU-GCGGCU-GAgUU-CGCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 30637 0.67 0.658887
Target:  5'- aAGC-CGUCGACaaacggcaagUUggGCGCCGGCa- -3'
miRNA:   3'- gUCGuGCGGCUG----------AGuuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 365 0.67 0.699724
Target:  5'- cUAGCACGCCGAC---GGCGuaCCAGUc- -3'
miRNA:   3'- -GUCGUGCGGCUGaguUCGC--GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 118300 0.67 0.669151
Target:  5'- -uGUACGCCGACagggUCgAGGCGgCCGGC-Cg -3'
miRNA:   3'- guCGUGCGGCUG----AG-UUCGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 49854 0.67 0.669151
Target:  5'- -uGCGCGCCGGC-CGGcGCGCCuugccGGCg- -3'
miRNA:   3'- guCGUGCGGCUGaGUU-CGCGG-----UCGag -5'
6750 5' -58.4 NC_001875.2 + 117277 0.67 0.698712
Target:  5'- gCGGCcgauGCGCUucacgauGGCcgCGuGCGCCAGCUCa -3'
miRNA:   3'- -GUCG----UGCGG-------CUGa-GUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 6620 0.67 0.709813
Target:  5'- -cGCACGCgGugUaCucGUGCCAGCg- -3'
miRNA:   3'- guCGUGCGgCugA-GuuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 53916 0.67 0.689579
Target:  5'- gGGCGCGCCGuugCGGGCGCguuGGCg- -3'
miRNA:   3'- gUCGUGCGGCugaGUUCGCGg--UCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.