miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 130631 0.72 0.396419
Target:  5'- -uGCACGCCGAUcaggagCAGGCGCaugCGGUUCa -3'
miRNA:   3'- guCGUGCGGCUGa-----GUUCGCG---GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 77967 0.72 0.413725
Target:  5'- gCGGCGCGCaCGAC-CAacaggccgacGGUGCCAGCg- -3'
miRNA:   3'- -GUCGUGCG-GCUGaGU----------UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 42858 0.72 0.413725
Target:  5'- cCGGCGCGCCGcagGCgCAGGUccGCCAGCg- -3'
miRNA:   3'- -GUCGUGCGGC---UGaGUUCG--CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 76109 0.72 0.42255
Target:  5'- gGGCGCGCCGuagcGCUCcuuuuccAGCGCCAcgucaaugcGCUCa -3'
miRNA:   3'- gUCGUGCGGC----UGAGu------UCGCGGU---------CGAG- -5'
6750 5' -58.4 NC_001875.2 + 66085 0.72 0.42255
Target:  5'- cCAGC-CGCCGGCUCAGGuCGCUcGUg- -3'
miRNA:   3'- -GUCGuGCGGCUGAGUUC-GCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 18240 0.71 0.431488
Target:  5'- gCGGCccgcCGCCGACUCGAaCGCCGuGCUg -3'
miRNA:   3'- -GUCGu---GCGGCUGAGUUcGCGGU-CGAg -5'
6750 5' -58.4 NC_001875.2 + 98402 0.71 0.435094
Target:  5'- uGGCggACGCgGACgUuguguuucaagcggaCGAGCGCCAGCUCa -3'
miRNA:   3'- gUCG--UGCGgCUG-A---------------GUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 71604 0.71 0.449689
Target:  5'- aGGCgugGCgGACaUCAAGCGCgAGCUCg -3'
miRNA:   3'- gUCGug-CGgCUG-AGUUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 85672 0.71 0.458947
Target:  5'- gGGCGCGCCGGC-CugcAGCGacucgaCCAGCUUg -3'
miRNA:   3'- gUCGUGCGGCUGaGu--UCGC------GGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 36104 0.71 0.458947
Target:  5'- gCAGCACG-CGGCggcGGCGCC-GCUCa -3'
miRNA:   3'- -GUCGUGCgGCUGaguUCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 59119 0.71 0.468305
Target:  5'- -cGCugGCCGACgcgCAAGCGCaauuaaCGGCg- -3'
miRNA:   3'- guCGugCGGCUGa--GUUCGCG------GUCGag -5'
6750 5' -58.4 NC_001875.2 + 4429 0.71 0.468305
Target:  5'- gCGGCAUGCUGACgCGcGcCGCCAGCa- -3'
miRNA:   3'- -GUCGUGCGGCUGaGUuC-GCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 84117 0.71 0.477761
Target:  5'- -uGgGCGCCGGCUCAAGCaGCaGGCa- -3'
miRNA:   3'- guCgUGCGGCUGAGUUCG-CGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 19849 0.7 0.487309
Target:  5'- aCAGCGCGCaaGACUCGgccgcgucgcGGCGCgGGCg- -3'
miRNA:   3'- -GUCGUGCGg-CUGAGU----------UCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 29268 0.7 0.496947
Target:  5'- gCGGC-CGCCGACc---GCGCCGGCg- -3'
miRNA:   3'- -GUCGuGCGGCUGaguuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 11100 0.7 0.496947
Target:  5'- aCGGC-CGCCGuCUC-GGCGCCgcAGCUg -3'
miRNA:   3'- -GUCGuGCGGCuGAGuUCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 70244 0.7 0.50667
Target:  5'- cCAGCGCGCgGugaUCGGGCGCUAcCUCc -3'
miRNA:   3'- -GUCGUGCGgCug-AGUUCGCGGUcGAG- -5'
6750 5' -58.4 NC_001875.2 + 95406 0.7 0.520415
Target:  5'- gCAGCGCGCCGGCgucgCAaagguaaggccucgcGGCGCCcGUg- -3'
miRNA:   3'- -GUCGUGCGGCUGa---GU---------------UCGCGGuCGag -5'
6750 5' -58.4 NC_001875.2 + 38449 0.7 0.52536
Target:  5'- gCAGCAagUGCCGGCgcgCGcuagaauuggugcAGCGCguGCUCg -3'
miRNA:   3'- -GUCGU--GCGGCUGa--GU-------------UCGCGguCGAG- -5'
6750 5' -58.4 NC_001875.2 + 114164 0.7 0.536299
Target:  5'- gCAGcCGCGUCGGCUaaa-CGCCAGCUUc -3'
miRNA:   3'- -GUC-GUGCGGCUGAguucGCGGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.