miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 102425 0.66 0.729779
Target:  5'- -cGCuCGCCGuuGC-CGAGCGCCGGgUUg -3'
miRNA:   3'- guCGuGCGGC--UGaGUUCGCGGUCgAG- -5'
6750 5' -58.4 NC_001875.2 + 12300 0.66 0.729779
Target:  5'- cCGGCACGCCGccgugugcguGgUCAAcGCGcCCGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGC----------UgAGUU-CGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 119637 0.66 0.729779
Target:  5'- cCGGCACGCUGAacgcguUUUAcGCGCCcaAGCUg -3'
miRNA:   3'- -GUCGUGCGGCU------GAGUuCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 50666 0.66 0.729779
Target:  5'- cCAGCauGCGCUGGCcgUCGgcccgaaaGGCGCCuGCUUu -3'
miRNA:   3'- -GUCG--UGCGGCUG--AGU--------UCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 43816 0.66 0.729779
Target:  5'- aCGGCuuUGCCGGCU--AGCGCaAGCUUg -3'
miRNA:   3'- -GUCGu-GCGGCUGAguUCGCGgUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 122039 0.66 0.729779
Target:  5'- gCAGC-CGCCGAU---GGCGCCGuGCa- -3'
miRNA:   3'- -GUCGuGCGGCUGaguUCGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 114680 0.66 0.729779
Target:  5'- uCAGCgGCGaCCGugcuuUUCGGGUGCCAacGCUCu -3'
miRNA:   3'- -GUCG-UGC-GGCu----GAGUUCGCGGU--CGAG- -5'
6750 5' -58.4 NC_001875.2 + 41120 0.66 0.728789
Target:  5'- -cGCACGUCGugUCGcgcuugaccggcgGccGCGCCGGCa- -3'
miRNA:   3'- guCGUGCGGCugAGU-------------U--CGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 60191 0.66 0.728789
Target:  5'- aCAGCgcuucguugaauuGCGCCGGCggCAgauugaAGCGgCCgAGCUCg -3'
miRNA:   3'- -GUCG-------------UGCGGCUGa-GU------UCGC-GG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 14518 0.66 0.719834
Target:  5'- -cGcCGCGCCGugUCAAGcCGCUcaacaagagugAGCUg -3'
miRNA:   3'- guC-GUGCGGCugAGUUC-GCGG-----------UCGAg -5'
6750 5' -58.4 NC_001875.2 + 79118 0.66 0.719834
Target:  5'- aCGGCguuGUCGGCggCGGGCGCCgcggcgGGCUCg -3'
miRNA:   3'- -GUCGug-CGGCUGa-GUUCGCGG------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 80634 0.66 0.719834
Target:  5'- -cGCGCGCuCGACgggcGGCGCCAGa-- -3'
miRNA:   3'- guCGUGCG-GCUGagu-UCGCGGUCgag -5'
6750 5' -58.4 NC_001875.2 + 31807 0.67 0.709813
Target:  5'- cCGGCACGaCGAacgcggCAAGCGCCGcGUUUg -3'
miRNA:   3'- -GUCGUGCgGCUga----GUUCGCGGU-CGAG- -5'
6750 5' -58.4 NC_001875.2 + 86384 0.67 0.709813
Target:  5'- gCGGC-UGCgGGCgcCGAGCGCCgAGUUCg -3'
miRNA:   3'- -GUCGuGCGgCUGa-GUUCGCGG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 59639 0.67 0.709813
Target:  5'- -cGCGuCGCUGGCUCGugggcuguuugAGC-CCAGCUUg -3'
miRNA:   3'- guCGU-GCGGCUGAGU-----------UCGcGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 105067 0.67 0.709813
Target:  5'- aCGGCGCGUCG-CUCAacgAGUGCUacGGCg- -3'
miRNA:   3'- -GUCGUGCGGCuGAGU---UCGCGG--UCGag -5'
6750 5' -58.4 NC_001875.2 + 6620 0.67 0.709813
Target:  5'- -cGCACGCgGugUaCucGUGCCAGCg- -3'
miRNA:   3'- guCGUGCGgCugA-GuuCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 21299 0.67 0.709813
Target:  5'- uCAGCugGCagaaaaGCUCAagaAGCGCCAGgUg -3'
miRNA:   3'- -GUCGugCGgc----UGAGU---UCGCGGUCgAg -5'
6750 5' -58.4 NC_001875.2 + 8221 0.67 0.708807
Target:  5'- aCGGCGCaGUCGACUUcgaucacuuuuuuGGGCaGCCGGCg- -3'
miRNA:   3'- -GUCGUG-CGGCUGAG-------------UUCG-CGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 365 0.67 0.699724
Target:  5'- cUAGCACGCCGAC---GGCGuaCCAGUc- -3'
miRNA:   3'- -GUCGUGCGGCUGaguUCGC--GGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.