miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 23244 0.67 0.699724
Target:  5'- gCAGCugGUcggagaacagCGACgggCAgcgcAGCGCCAGCa- -3'
miRNA:   3'- -GUCGugCG----------GCUGa--GU----UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 128946 0.67 0.699724
Target:  5'- aGGCACGagCGGCUaAGGCGUgAGCUg -3'
miRNA:   3'- gUCGUGCg-GCUGAgUUCGCGgUCGAg -5'
6750 5' -58.4 NC_001875.2 + 365 0.67 0.699724
Target:  5'- cUAGCACGCCGAC---GGCGuaCCAGUc- -3'
miRNA:   3'- -GUCGUGCGGCUGaguUCGC--GGUCGag -5'
6750 5' -58.4 NC_001875.2 + 117277 0.67 0.698712
Target:  5'- gCGGCcgauGCGCUucacgauGGCcgCGuGCGCCAGCUCa -3'
miRNA:   3'- -GUCG----UGCGG-------CUGa-GUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 81949 0.67 0.698712
Target:  5'- uUAGCACGCgcagcuccgaCGAC-CAcuugguuGGCGCCGGCa- -3'
miRNA:   3'- -GUCGUGCG----------GCUGaGU-------UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 41467 0.67 0.698712
Target:  5'- gCGGCGCGCgCGGCgugucuuguguggUCu-GCGCCGGC-Cg -3'
miRNA:   3'- -GUCGUGCG-GCUG-------------AGuuCGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 23171 0.67 0.693643
Target:  5'- gGGCACGgCGGCUgCGGGCacgGCCguuggcgguugcaguAGCUCa -3'
miRNA:   3'- gUCGUGCgGCUGA-GUUCG---CGG---------------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 114513 0.67 0.689579
Target:  5'- -cGCGCGgCGGCgCAAcCGCCAGCa- -3'
miRNA:   3'- guCGUGCgGCUGaGUUcGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 53916 0.67 0.689579
Target:  5'- gGGCGCGCCGuugCGGGCGCguuGGCg- -3'
miRNA:   3'- gUCGUGCGGCugaGUUCGCGg--UCGag -5'
6750 5' -58.4 NC_001875.2 + 34016 0.67 0.689579
Target:  5'- cCAGCACGuuGGaaaUguAGCGUC-GCUCg -3'
miRNA:   3'- -GUCGUGCggCUg--AguUCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 72557 0.67 0.689579
Target:  5'- gGGCGCuGCgGGCgCGGGCGCgGGCg- -3'
miRNA:   3'- gUCGUG-CGgCUGaGUUCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 104757 0.67 0.688561
Target:  5'- gGGCgucgGCGCCGACaaucucagauaUCAAGgGCCgcgaucgccggcgAGCUCa -3'
miRNA:   3'- gUCG----UGCGGCUG-----------AGUUCgCGG-------------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 49588 0.67 0.679385
Target:  5'- -uGCGCGCCGAC--GAGCGCuaccacCAGCg- -3'
miRNA:   3'- guCGUGCGGCUGagUUCGCG------GUCGag -5'
6750 5' -58.4 NC_001875.2 + 49854 0.67 0.669151
Target:  5'- -uGCGCGCCGGC-CGGcGCGCCuugccGGCg- -3'
miRNA:   3'- guCGUGCGGCUGaGUU-CGCGG-----UCGag -5'
6750 5' -58.4 NC_001875.2 + 118300 0.67 0.669151
Target:  5'- -uGUACGCCGACagggUCgAGGCGgCCGGC-Cg -3'
miRNA:   3'- guCGUGCGGCUG----AG-UUCGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 81991 0.67 0.669151
Target:  5'- aGGCGCGCCGGC-CGGcGCGCaaaaagaAGCg- -3'
miRNA:   3'- gUCGUGCGGCUGaGUU-CGCGg------UCGag -5'
6750 5' -58.4 NC_001875.2 + 111880 0.67 0.668126
Target:  5'- aCGGCgagGCGCCGGC-CGGaccgugcGCGCCGGC-Cg -3'
miRNA:   3'- -GUCG---UGCGGCUGaGUU-------CGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 32773 0.67 0.668126
Target:  5'- gAGCGCGUccucgcgCGGCgugggCGGGCGCCgcgccggcaAGCUCg -3'
miRNA:   3'- gUCGUGCG-------GCUGa----GUUCGCGG---------UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 93659 0.67 0.658887
Target:  5'- gAGCACGuuGACgaccugcgUCGGGCGCuCGcGUUCa -3'
miRNA:   3'- gUCGUGCggCUG--------AGUUCGCG-GU-CGAG- -5'
6750 5' -58.4 NC_001875.2 + 27156 0.67 0.658887
Target:  5'- uUAGCGacauUGCCGACauggcCAAGgGCgAGCUCa -3'
miRNA:   3'- -GUCGU----GCGGCUGa----GUUCgCGgUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.