miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 105302 1.09 0.001125
Target:  5'- cCAGCACGCCGACUCAAGCGCCAGCUCa -3'
miRNA:   3'- -GUCGUGCGGCUGAGUUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 2298 0.7 0.536299
Target:  5'- -cGCGCGCCGuggccgcgcgcaGCUCG---GCCAGCUCg -3'
miRNA:   3'- guCGUGCGGC------------UGAGUucgCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 6553 0.7 0.540297
Target:  5'- gCGGCGCGucaacaagguguaccCCGAC---AGCGCCAGCUUc -3'
miRNA:   3'- -GUCGUGC---------------GGCUGaguUCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 52212 0.66 0.76861
Target:  5'- -uGCGCGCCGugcaaACUgGAcGCGCgacugCGGCUCa -3'
miRNA:   3'- guCGUGCGGC-----UGAgUU-CGCG-----GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 89078 0.74 0.295867
Target:  5'- -cGCACgGCCGACcCGAGCGCgCcGCUCa -3'
miRNA:   3'- guCGUG-CGGCUGaGUUCGCG-GuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 98052 0.74 0.309956
Target:  5'- uCGGCAUGCUGA-UCGAGCGCCAcaaCUCg -3'
miRNA:   3'- -GUCGUGCGGCUgAGUUCGCGGUc--GAG- -5'
6750 5' -58.4 NC_001875.2 + 70333 0.73 0.371353
Target:  5'- gAGCACGCgGACUgcGGCGCCgAGC-Cg -3'
miRNA:   3'- gUCGUGCGgCUGAguUCGCGG-UCGaG- -5'
6750 5' -58.4 NC_001875.2 + 5502 0.73 0.371353
Target:  5'- aCAGCACGaCCGGCgCAcGCGCgCAGUUUa -3'
miRNA:   3'- -GUCGUGC-GGCUGaGUuCGCG-GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 77967 0.72 0.413725
Target:  5'- gCGGCGCGCaCGAC-CAacaggccgacGGUGCCAGCg- -3'
miRNA:   3'- -GUCGUGCG-GCUGaGU----------UCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 70244 0.7 0.50667
Target:  5'- cCAGCGCGCgGugaUCGGGCGCUAcCUCc -3'
miRNA:   3'- -GUCGUGCGgCug-AGUUCGCGGUcGAG- -5'
6750 5' -58.4 NC_001875.2 + 36104 0.71 0.458947
Target:  5'- gCAGCACG-CGGCggcGGCGCC-GCUCa -3'
miRNA:   3'- -GUCGUGCgGCUGaguUCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 130631 0.72 0.396419
Target:  5'- -uGCACGCCGAUcaggagCAGGCGCaugCGGUUCa -3'
miRNA:   3'- guCGUGCGGCUGa-----GUUCGCG---GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 53249 0.78 0.181543
Target:  5'- aAGCACGCCGACUCAAGCaaaAGCg- -3'
miRNA:   3'- gUCGUGCGGCUGAGUUCGcggUCGag -5'
6750 5' -58.4 NC_001875.2 + 84117 0.71 0.477761
Target:  5'- -uGgGCGCCGGCUCAAGCaGCaGGCa- -3'
miRNA:   3'- guCgUGCGGCUGAGUUCG-CGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 61587 0.77 0.190936
Target:  5'- uUAGCgGCGaCGGCUCGGGCGCCGGCg- -3'
miRNA:   3'- -GUCG-UGCgGCUGAGUUCGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 105825 0.72 0.379587
Target:  5'- aCAGCAUGCUGACcgccCAGGCGCCgacGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGCUGa---GUUCGCGG---UCGaG- -5'
6750 5' -58.4 NC_001875.2 + 19849 0.7 0.487309
Target:  5'- aCAGCGCGCaaGACUCGgccgcgucgcGGCGCgGGCg- -3'
miRNA:   3'- -GUCGUGCGg-CUGAGU----------UCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 81919 0.7 0.536299
Target:  5'- uUAGCGCGCgCGGCUCcgaCGaCCAGCUg -3'
miRNA:   3'- -GUCGUGCG-GCUGAGuucGC-GGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 9125 0.75 0.282282
Target:  5'- -cGgACGCCgugGACUCGcGCGCCAGUUCg -3'
miRNA:   3'- guCgUGCGG---CUGAGUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 55865 0.73 0.355253
Target:  5'- gAGCACGCCGACUCGA-CuaCGGCg- -3'
miRNA:   3'- gUCGUGCGGCUGAGUUcGcgGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.