miRNA display CGI


Results 1 - 20 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 5' -58.4 NC_001875.2 + 130631 0.72 0.396419
Target:  5'- -uGCACGCCGAUcaggagCAGGCGCaugCGGUUCa -3'
miRNA:   3'- guCGUGCGGCUGa-----GUUCGCG---GUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 128946 0.67 0.699724
Target:  5'- aGGCACGagCGGCUaAGGCGUgAGCUg -3'
miRNA:   3'- gUCGUGCg-GCUGAgUUCGCGgUCGAg -5'
6750 5' -58.4 NC_001875.2 + 127042 0.69 0.597137
Target:  5'- aAGCugG-CGACa-GGGCGCCGGCUg -3'
miRNA:   3'- gUCGugCgGCUGagUUCGCGGUCGAg -5'
6750 5' -58.4 NC_001875.2 + 124202 0.66 0.739639
Target:  5'- gAGCGCGUCGGCguguGUGCgCAGgUCg -3'
miRNA:   3'- gUCGUGCGGCUGaguuCGCG-GUCgAG- -5'
6750 5' -58.4 NC_001875.2 + 122752 0.68 0.648602
Target:  5'- gGGUuaGCGCCGACUCGccacaGGCGCaguuGGCg- -3'
miRNA:   3'- gUCG--UGCGGCUGAGU-----UCGCGg---UCGag -5'
6750 5' -58.4 NC_001875.2 + 122039 0.66 0.729779
Target:  5'- gCAGC-CGCCGAU---GGCGCCGuGCa- -3'
miRNA:   3'- -GUCGuGCGGCUGaguUCGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 119637 0.66 0.729779
Target:  5'- cCGGCACGCUGAacgcguUUUAcGCGCCcaAGCUg -3'
miRNA:   3'- -GUCGUGCGGCU------GAGUuCGCGG--UCGAg -5'
6750 5' -58.4 NC_001875.2 + 118300 0.67 0.669151
Target:  5'- -uGUACGCCGACagggUCgAGGCGgCCGGC-Cg -3'
miRNA:   3'- guCGUGCGGCUG----AG-UUCGC-GGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 117356 0.73 0.363241
Target:  5'- cCGGCGgGCCGGCUgGccgucggggaGGCGCCgAGCUUg -3'
miRNA:   3'- -GUCGUgCGGCUGAgU----------UCGCGG-UCGAG- -5'
6750 5' -58.4 NC_001875.2 + 117277 0.67 0.698712
Target:  5'- gCGGCcgauGCGCUucacgauGGCcgCGuGCGCCAGCUCa -3'
miRNA:   3'- -GUCG----UGCGG-------CUGa-GUuCGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 117027 0.68 0.627999
Target:  5'- gGGCGCGCUGAC-CAugcuGGCGCUccuGGCa- -3'
miRNA:   3'- gUCGUGCGGCUGaGU----UCGCGG---UCGag -5'
6750 5' -58.4 NC_001875.2 + 114680 0.66 0.729779
Target:  5'- uCAGCgGCGaCCGugcuuUUCGGGUGCCAacGCUCu -3'
miRNA:   3'- -GUCG-UGC-GGCu----GAGUUCGCGGU--CGAG- -5'
6750 5' -58.4 NC_001875.2 + 114513 0.67 0.689579
Target:  5'- -cGCGCGgCGGCgCAAcCGCCAGCa- -3'
miRNA:   3'- guCGUGCgGCUGaGUUcGCGGUCGag -5'
6750 5' -58.4 NC_001875.2 + 114164 0.7 0.536299
Target:  5'- gCAGcCGCGUCGGCUaaa-CGCCAGCUUc -3'
miRNA:   3'- -GUC-GUGCGGCUGAguucGCGGUCGAG- -5'
6750 5' -58.4 NC_001875.2 + 113386 0.69 0.546312
Target:  5'- uCAGCgGCGCgCGAUUCGcGCGCCAcGCg- -3'
miRNA:   3'- -GUCG-UGCG-GCUGAGUuCGCGGU-CGag -5'
6750 5' -58.4 NC_001875.2 + 113154 0.69 0.576681
Target:  5'- -uGCACGCCGGCgCGcGCGCC-GUUUg -3'
miRNA:   3'- guCGUGCGGCUGaGUuCGCGGuCGAG- -5'
6750 5' -58.4 NC_001875.2 + 111880 0.67 0.668126
Target:  5'- aCGGCgagGCGCCGGC-CGGaccgugcGCGCCGGC-Cg -3'
miRNA:   3'- -GUCG---UGCGGCUGaGUU-------CGCGGUCGaG- -5'
6750 5' -58.4 NC_001875.2 + 111205 0.68 0.627999
Target:  5'- -cGCGCGCCGuuuuuuguuGCUCAcgGGCGUgGGCa- -3'
miRNA:   3'- guCGUGCGGC---------UGAGU--UCGCGgUCGag -5'
6750 5' -58.4 NC_001875.2 + 105825 0.72 0.379587
Target:  5'- aCAGCAUGCUGACcgccCAGGCGCCgacGGC-Ca -3'
miRNA:   3'- -GUCGUGCGGCUGa---GUUCGCGG---UCGaG- -5'
6750 5' -58.4 NC_001875.2 + 105302 1.09 0.001125
Target:  5'- cCAGCACGCCGACUCAAGCGCCAGCUCa -3'
miRNA:   3'- -GUCGUGCGGCUGAGUUCGCGGUCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.