Results 41 - 60 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6751 | 3' | -54.2 | NC_001875.2 | + | 100267 | 0.66 | 0.932371 |
Target: 5'- -gGGCGGCGCGcaaGGAAGcCGCCGgGc -3' miRNA: 3'- cgUCGUCGCGCug-CUUUU-GCGGUgCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 47650 | 0.66 | 0.932371 |
Target: 5'- gGCAGCuguuGCGCaaacgcACGGAcGCGgCCGCGg -3' miRNA: 3'- -CGUCGu---CGCGc-----UGCUUuUGC-GGUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 32441 | 0.66 | 0.932371 |
Target: 5'- uGC-GCuGCGCGACccgcuGGCGCCGCc- -3' miRNA: 3'- -CGuCGuCGCGCUGcuu--UUGCGGUGca -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 10869 | 0.66 | 0.932371 |
Target: 5'- cGCGGUGGcCGCGuCGguGGCGCUGCc- -3' miRNA: 3'- -CGUCGUC-GCGCuGCuuUUGCGGUGca -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 110818 | 0.66 | 0.927071 |
Target: 5'- cGCAGguGgaCGCGcUGGu-GCGCCGCGg -3' miRNA: 3'- -CGUCguC--GCGCuGCUuuUGCGGUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 29431 | 0.66 | 0.927071 |
Target: 5'- aCGGCgAGCGCGACGc---CGaCACGUa -3' miRNA: 3'- cGUCG-UCGCGCUGCuuuuGCgGUGCA- -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 77092 | 0.66 | 0.927071 |
Target: 5'- cGCuGGCGGUGcCGGCGGu-GCGCCcgcACGg -3' miRNA: 3'- -CG-UCGUCGC-GCUGCUuuUGCGG---UGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 68856 | 0.66 | 0.924881 |
Target: 5'- cGCAcGCGuGCGCGAgugcccCGAcaacuacacguuuGACGCCGCGUc -3' miRNA: 3'- -CGU-CGU-CGCGCU------GCUu------------UUGCGGUGCA- -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 121370 | 0.66 | 0.923771 |
Target: 5'- uCAGCaagcgccauucacugAGCGCGcCGcc-GCGCCGCGUc -3' miRNA: 3'- cGUCG---------------UCGCGCuGCuuuUGCGGUGCA- -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 97993 | 0.66 | 0.921521 |
Target: 5'- cGCAcGguGCGCGACGuguuguuuGACGagGCGUu -3' miRNA: 3'- -CGU-CguCGCGCUGCuu------UUGCggUGCA- -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 95402 | 0.66 | 0.921521 |
Target: 5'- aGCcGCAGCGCGcCG---GCGUCGCa- -3' miRNA: 3'- -CGuCGUCGCGCuGCuuuUGCGGUGca -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 114049 | 0.66 | 0.921521 |
Target: 5'- gGUAGCAcGCGgGcuGCGcguACGCCACGc -3' miRNA: 3'- -CGUCGU-CGCgC--UGCuuuUGCGGUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 780 | 0.66 | 0.921521 |
Target: 5'- aCGGCGGCGCG-CG-GAACGuUCAUGg -3' miRNA: 3'- cGUCGUCGCGCuGCuUUUGC-GGUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 39081 | 0.66 | 0.921521 |
Target: 5'- -uGGCGGCGUuuACGAAuACGCCAaCGc -3' miRNA: 3'- cgUCGUCGCGc-UGCUUuUGCGGU-GCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 98367 | 0.66 | 0.921521 |
Target: 5'- cCAGC-GCGCGGC----GCGCCACu- -3' miRNA: 3'- cGUCGuCGCGCUGcuuuUGCGGUGca -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 29086 | 0.66 | 0.921521 |
Target: 5'- cGCuGCAGCGCu-CGugcAAAgGCCGCGc -3' miRNA: 3'- -CGuCGUCGCGcuGCu--UUUgCGGUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 30451 | 0.66 | 0.921521 |
Target: 5'- cGCAGCuGGCGCG-CGuu-GCG-CGCGUu -3' miRNA: 3'- -CGUCG-UCGCGCuGCuuuUGCgGUGCA- -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 131069 | 0.66 | 0.921521 |
Target: 5'- aCAGCuuuAGCGcCGACGAAAucaACGUgCACGa -3' miRNA: 3'- cGUCG---UCGC-GCUGCUUU---UGCG-GUGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 17827 | 0.66 | 0.921521 |
Target: 5'- cGCGGCcGCcauGCG-CGAGGGCGCCgaaaACGa -3' miRNA: 3'- -CGUCGuCG---CGCuGCUUUUGCGG----UGCa -5' |
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6751 | 3' | -54.2 | NC_001875.2 | + | 108736 | 0.66 | 0.920952 |
Target: 5'- cGCAGCGGCcuuUGGCGggGcagcugcACGCgGCGc -3' miRNA: 3'- -CGUCGUCGc--GCUGCuuU-------UGCGgUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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