miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 11932 0.66 0.942226
Target:  5'- uGCGcGCGGCGCGcCGAcuGUGCgCGCGa -3'
miRNA:   3'- -CGU-CGUCGCGCuGCUuuUGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 118887 0.66 0.942226
Target:  5'- cGC-GCcGcCGCGACGAGAcCGUCACa- -3'
miRNA:   3'- -CGuCGuC-GCGCUGCUUUuGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 56907 0.66 0.942226
Target:  5'- cGCAGCAGCGgcuUGuCGccuuuAAGGCGgCCGCGa -3'
miRNA:   3'- -CGUCGUCGC---GCuGC-----UUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 79495 0.66 0.937423
Target:  5'- cGCAGCaacaauucgaGGCGCGcCGAAAACuUgACGUu -3'
miRNA:   3'- -CGUCG----------UCGCGCuGCUUUUGcGgUGCA- -5'
6751 3' -54.2 NC_001875.2 + 117276 0.66 0.937423
Target:  5'- cGCGGCcgauGCGCuuCacGAugGCCGCGUg -3'
miRNA:   3'- -CGUCGu---CGCGcuGcuUUugCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 44540 0.66 0.937423
Target:  5'- aGCAGCGucGCGCGGCGugccGgGCUGCa- -3'
miRNA:   3'- -CGUCGU--CGCGCUGCuuu-UgCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 69416 0.66 0.937423
Target:  5'- uGCAGcCGGCGCaGCGcAAACGCUugcccACGc -3'
miRNA:   3'- -CGUC-GUCGCGcUGCuUUUGCGG-----UGCa -5'
6751 3' -54.2 NC_001875.2 + 95013 0.66 0.937423
Target:  5'- uUAGUGGCGCgGGCGcgcAACuGCCGCGg -3'
miRNA:   3'- cGUCGUCGCG-CUGCuu-UUG-CGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 115595 0.66 0.937423
Target:  5'- cGCAcGC-GCGUGACGGccucguCGCCGCa- -3'
miRNA:   3'- -CGU-CGuCGCGCUGCUuuu---GCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 86113 0.66 0.937423
Target:  5'- aCGGCuuCGCGugGAcGugGCCAuCGg -3'
miRNA:   3'- cGUCGucGCGCugCUuUugCGGU-GCa -5'
6751 3' -54.2 NC_001875.2 + 99689 0.66 0.937423
Target:  5'- -gAGCAGCGCGucuuCGccgccguuGAGCGCUAUGc -3'
miRNA:   3'- cgUCGUCGCGCu---GCu-------UUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 40088 0.66 0.937423
Target:  5'- gGCcGCGGCGCuGAC----GCGCCACu- -3'
miRNA:   3'- -CGuCGUCGCG-CUGcuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 126668 0.66 0.937423
Target:  5'- cGCcauGCAcGCGCuGACGAGcACGUUGCGg -3'
miRNA:   3'- -CGu--CGU-CGCG-CUGCUUuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 79260 0.66 0.934422
Target:  5'- gGUGGC-GCGCGugGAGacgaugucaaugucuGugGCgCGCGUg -3'
miRNA:   3'- -CGUCGuCGCGCugCUU---------------UugCG-GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 10869 0.66 0.932371
Target:  5'- cGCGGUGGcCGCGuCGguGGCGCUGCc- -3'
miRNA:   3'- -CGUCGUC-GCGCuGCuuUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 47650 0.66 0.932371
Target:  5'- gGCAGCuguuGCGCaaacgcACGGAcGCGgCCGCGg -3'
miRNA:   3'- -CGUCGu---CGCGc-----UGCUUuUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 62479 0.66 0.932371
Target:  5'- gGCGcGCAGCG-GGCGc--ACGCCGCu- -3'
miRNA:   3'- -CGU-CGUCGCgCUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 7090 0.66 0.932371
Target:  5'- gGCAGCuacuacguGCGCGGCucGGACgGCgGCGa -3'
miRNA:   3'- -CGUCGu-------CGCGCUGcuUUUG-CGgUGCa -5'
6751 3' -54.2 NC_001875.2 + 100267 0.66 0.932371
Target:  5'- -gGGCGGCGCGcaaGGAAGcCGCCGgGc -3'
miRNA:   3'- cgUCGUCGCGCug-CUUUU-GCGGUgCa -5'
6751 3' -54.2 NC_001875.2 + 13906 0.66 0.932371
Target:  5'- cGCGGCGGCGCGcACGccGGC-CUGCa- -3'
miRNA:   3'- -CGUCGUCGCGC-UGCuuUUGcGGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.