miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 51534 0.66 0.932371
Target:  5'- cGCAcauUAGCGCuGGCGAAcACGCCgACGc -3'
miRNA:   3'- -CGUc--GUCGCG-CUGCUUuUGCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 77092 0.66 0.927071
Target:  5'- cGCuGGCGGUGcCGGCGGu-GCGCCcgcACGg -3'
miRNA:   3'- -CG-UCGUCGC-GCUGCUuuUGCGG---UGCa -5'
6751 3' -54.2 NC_001875.2 + 56907 0.66 0.942226
Target:  5'- cGCAGCAGCGgcuUGuCGccuuuAAGGCGgCCGCGa -3'
miRNA:   3'- -CGUCGUCGC---GCuGC-----UUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 100267 0.66 0.932371
Target:  5'- -gGGCGGCGCGcaaGGAAGcCGCCGgGc -3'
miRNA:   3'- cgUCGUCGCGCug-CUUUU-GCGGUgCa -5'
6751 3' -54.2 NC_001875.2 + 30451 0.66 0.921521
Target:  5'- cGCAGCuGGCGCG-CGuu-GCG-CGCGUu -3'
miRNA:   3'- -CGUCG-UCGCGCuGCuuuUGCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 79260 0.66 0.934422
Target:  5'- gGUGGC-GCGCGugGAGacgaugucaaugucuGugGCgCGCGUg -3'
miRNA:   3'- -CGUCGuCGCGCugCUU---------------UugCG-GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 32441 0.66 0.932371
Target:  5'- uGC-GCuGCGCGACccgcuGGCGCCGCc- -3'
miRNA:   3'- -CGuCGuCGCGCUGcuu--UUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 47019 0.66 0.919807
Target:  5'- uGguGgAGCGCGGCGAcAACauccaaaaguugcaGCCGCa- -3'
miRNA:   3'- -CguCgUCGCGCUGCUuUUG--------------CGGUGca -5'
6751 3' -54.2 NC_001875.2 + 26081 0.66 0.946784
Target:  5'- --uGCAGCGCGG-----GCGUCACGUu -3'
miRNA:   3'- cguCGUCGCGCUgcuuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 780 0.66 0.921521
Target:  5'- aCGGCGGCGCG-CG-GAACGuUCAUGg -3'
miRNA:   3'- cGUCGUCGCGCuGCuUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 30825 0.66 0.946784
Target:  5'- cGCGGCGGCaaacagguuguuGCGcaaaaccgcCGcAAACGCCGCGg -3'
miRNA:   3'- -CGUCGUCG------------CGCu--------GCuUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 97993 0.66 0.921521
Target:  5'- cGCAcGguGCGCGACGuguuguuuGACGagGCGUu -3'
miRNA:   3'- -CGU-CguCGCGCUGCuu------UUGCggUGCA- -5'
6751 3' -54.2 NC_001875.2 + 121370 0.66 0.923771
Target:  5'- uCAGCaagcgccauucacugAGCGCGcCGcc-GCGCCGCGUc -3'
miRNA:   3'- cGUCG---------------UCGCGCuGCuuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 62479 0.66 0.932371
Target:  5'- gGCGcGCAGCG-GGCGc--ACGCCGCu- -3'
miRNA:   3'- -CGU-CGUCGCgCUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 70200 0.66 0.932371
Target:  5'- -aAGCGGCGUGuCGc--GgGCCACGUu -3'
miRNA:   3'- cgUCGUCGCGCuGCuuuUgCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 110818 0.66 0.927071
Target:  5'- cGCAGguGgaCGCGcUGGu-GCGCCGCGg -3'
miRNA:   3'- -CGUCguC--GCGCuGCUuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 40693 0.66 0.946784
Target:  5'- --cGCGGCGCauuUGGAAcCGCCGCGc -3'
miRNA:   3'- cguCGUCGCGcu-GCUUUuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 17827 0.66 0.921521
Target:  5'- cGCGGCcGCcauGCG-CGAGGGCGCCgaaaACGa -3'
miRNA:   3'- -CGUCGuCG---CGCuGCUUUUGCGG----UGCa -5'
6751 3' -54.2 NC_001875.2 + 29431 0.66 0.927071
Target:  5'- aCGGCgAGCGCGACGc---CGaCACGUa -3'
miRNA:   3'- cGUCG-UCGCGCUGCuuuuGCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 124806 0.66 0.944079
Target:  5'- uGCAcCAGCGUGGCGgcGcuaaaggucagauacGCGCCGCc- -3'
miRNA:   3'- -CGUcGUCGCGCUGCuuU---------------UGCGGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.