miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 6938 0.66 0.946784
Target:  5'- -gAGCAaCGCGuCGugcguGCGCCGCGa -3'
miRNA:   3'- cgUCGUcGCGCuGCuuu--UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 26081 0.66 0.946784
Target:  5'- --uGCAGCGCGG-----GCGUCACGUu -3'
miRNA:   3'- cguCGUCGCGCUgcuuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 36407 0.66 0.942226
Target:  5'- cCAGCcGCGC-ACGcuggccGGCGCCGCGg -3'
miRNA:   3'- cGUCGuCGCGcUGCuu----UUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 124806 0.66 0.944079
Target:  5'- uGCAcCAGCGUGGCGgcGcuaaaggucagauacGCGCCGCc- -3'
miRNA:   3'- -CGUcGUCGCGCUGCuuU---------------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 51534 0.66 0.932371
Target:  5'- cGCAcauUAGCGCuGGCGAAcACGCCgACGc -3'
miRNA:   3'- -CGUc--GUCGCG-CUGCUUuUGCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 56907 0.66 0.942226
Target:  5'- cGCAGCAGCGgcuUGuCGccuuuAAGGCGgCCGCGa -3'
miRNA:   3'- -CGUCGUCGC---GCuGC-----UUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 47650 0.66 0.932371
Target:  5'- gGCAGCuguuGCGCaaacgcACGGAcGCGgCCGCGg -3'
miRNA:   3'- -CGUCGu---CGCGc-----UGCUUuUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 11932 0.66 0.942226
Target:  5'- uGCGcGCGGCGCGcCGAcuGUGCgCGCGa -3'
miRNA:   3'- -CGU-CGUCGCGCuGCUuuUGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 117276 0.66 0.937423
Target:  5'- cGCGGCcgauGCGCuuCacGAugGCCGCGUg -3'
miRNA:   3'- -CGUCGu---CGCGcuGcuUUugCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 68856 0.66 0.924881
Target:  5'- cGCAcGCGuGCGCGAgugcccCGAcaacuacacguuuGACGCCGCGUc -3'
miRNA:   3'- -CGU-CGU-CGCGCU------GCUu------------UUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 114049 0.66 0.921521
Target:  5'- gGUAGCAcGCGgGcuGCGcguACGCCACGc -3'
miRNA:   3'- -CGUCGU-CGCgC--UGCuuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 30451 0.66 0.921521
Target:  5'- cGCAGCuGGCGCG-CGuu-GCG-CGCGUu -3'
miRNA:   3'- -CGUCG-UCGCGCuGCuuuUGCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 10869 0.66 0.932371
Target:  5'- cGCGGUGGcCGCGuCGguGGCGCUGCc- -3'
miRNA:   3'- -CGUCGUC-GCGCuGCuuUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 97993 0.66 0.921521
Target:  5'- cGCAcGguGCGCGACGuguuguuuGACGagGCGUu -3'
miRNA:   3'- -CGU-CguCGCGCUGCuu------UUGCggUGCA- -5'
6751 3' -54.2 NC_001875.2 + 62479 0.66 0.932371
Target:  5'- gGCGcGCAGCG-GGCGc--ACGCCGCu- -3'
miRNA:   3'- -CGU-CGUCGCgCUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 83794 0.66 0.946784
Target:  5'- uGUAGCGcGCGCccucgugccuGugGGcgGCGgCCACGUg -3'
miRNA:   3'- -CGUCGU-CGCG----------CugCUuuUGC-GGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 110818 0.66 0.927071
Target:  5'- cGCAGguGgaCGCGcUGGu-GCGCCGCGg -3'
miRNA:   3'- -CGUCguC--GCGCuGCUuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 103330 0.66 0.932371
Target:  5'- gGCGacGCGuGCGCGACGGcua-GCCACa- -3'
miRNA:   3'- -CGU--CGU-CGCGCUGCUuuugCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 40088 0.66 0.937423
Target:  5'- gGCcGCGGCGCuGAC----GCGCCACu- -3'
miRNA:   3'- -CGuCGUCGCG-CUGcuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 95402 0.66 0.921521
Target:  5'- aGCcGCAGCGCGcCG---GCGUCGCa- -3'
miRNA:   3'- -CGuCGUCGCGCuGCuuuUGCGGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.