miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 105010 1.1 0.003201
Target:  5'- uGCAGCAGCGCGACGAAAACGCCACGUg -3'
miRNA:   3'- -CGUCGUCGCGCUGCUUUUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 113623 0.89 0.080694
Target:  5'- cGCGGCGGCaagaGCGGCGAcgGCGCCGCGUa -3'
miRNA:   3'- -CGUCGUCG----CGCUGCUuuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 46514 0.83 0.174517
Target:  5'- cGCGGCgGGCGgGGCGAGAGCGcCCGCGg -3'
miRNA:   3'- -CGUCG-UCGCgCUGCUUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 33032 0.83 0.179067
Target:  5'- aGC-GCAGCGCGGCGG--GCGCCGCGc -3'
miRNA:   3'- -CGuCGUCGCGCUGCUuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 36100 0.83 0.188484
Target:  5'- cGCGGCAGCacGCGGCGGcgGCGCCGCu- -3'
miRNA:   3'- -CGUCGUCG--CGCUGCUuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 69815 0.82 0.208628
Target:  5'- cGCAGCAGCGCGAUGgcGACaUCGCGUu -3'
miRNA:   3'- -CGUCGUCGCGCUGCuuUUGcGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 3067 0.82 0.213947
Target:  5'- cGCAGCGGCGCGcCGggGuCGcCCACGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCuuUuGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 92749 0.79 0.301155
Target:  5'- uGCAGCAGCGCGuugGCGuauucguAAACGCCGCc- -3'
miRNA:   3'- -CGUCGUCGCGC---UGCu------UUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 66113 0.79 0.308334
Target:  5'- cGCGGCGG-GCGGCGAGgcGGCGCCGCc- -3'
miRNA:   3'- -CGUCGUCgCGCUGCUU--UUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 113386 0.79 0.315644
Target:  5'- uCAGCGGCGCG-CGAuucgcGCGCCACGc -3'
miRNA:   3'- cGUCGUCGCGCuGCUuu---UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 43597 0.78 0.338353
Target:  5'- gGCGGCAGCgGCGGCGc--GCGCCGCu- -3'
miRNA:   3'- -CGUCGUCG-CGCUGCuuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 100882 0.78 0.346181
Target:  5'- cGCAGCGcGCGCGugG---GCGCCAUGg -3'
miRNA:   3'- -CGUCGU-CGCGCugCuuuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 81068 0.78 0.354139
Target:  5'- uGguGCGcCGCGACGAGAAgaGCCGCGUg -3'
miRNA:   3'- -CguCGUcGCGCUGCUUUUg-CGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 37567 0.78 0.354139
Target:  5'- cGCGGCAucgaguggauGCGcCGGCGcGAGCGCCGCGg -3'
miRNA:   3'- -CGUCGU----------CGC-GCUGCuUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 110747 0.78 0.354139
Target:  5'- uGCAGUuuaAGCGCGGCGAccgcCGCCGCGc -3'
miRNA:   3'- -CGUCG---UCGCGCUGCUuuu-GCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 118029 0.78 0.370439
Target:  5'- cGCGacCAGUGCGACGgcAACGCCGCGc -3'
miRNA:   3'- -CGUc-GUCGCGCUGCuuUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 91449 0.78 0.370439
Target:  5'- aGCGGCGGCGCGugG---GCGCgCAUGUc -3'
miRNA:   3'- -CGUCGUCGCGCugCuuuUGCG-GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 75270 0.78 0.370439
Target:  5'- gGCGGCGGCGuCGGCGAugGCGUCgGCGa -3'
miRNA:   3'- -CGUCGUCGC-GCUGCUuuUGCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 66678 0.78 0.370439
Target:  5'- aCGGCAGCGgGAUGGGAAUGCugCACGUg -3'
miRNA:   3'- cGUCGUCGCgCUGCUUUUGCG--GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 65780 0.77 0.378779
Target:  5'- gGCGGCGGCGCGuCGucguuGAGCGCCAg-- -3'
miRNA:   3'- -CGUCGUCGCGCuGCu----UUUGCGGUgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.