miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 58 0.69 0.815556
Target:  5'- uCGGCGGCgGCGGCGAAcgacaccaaugacGCGCCGCc- -3'
miRNA:   3'- cGUCGUCG-CGCUGCUUu------------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 456 0.68 0.875072
Target:  5'- --uGCAGCGCGgugaccugcucacACGAAGAguuccaaGCCACGUu -3'
miRNA:   3'- cguCGUCGCGC-------------UGCUUUUg------CGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 780 0.66 0.921521
Target:  5'- aCGGCGGCGCG-CG-GAACGuUCAUGg -3'
miRNA:   3'- cGUCGUCGCGCuGCuUUUGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 978 0.69 0.819085
Target:  5'- --uGCA-CGCGGCGAcgcuCGCCACGUu -3'
miRNA:   3'- cguCGUcGCGCUGCUuuu-GCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 1024 0.72 0.682929
Target:  5'- uGCAGC-GCGUGGCGggGcccgagGCGCacaGCGUu -3'
miRNA:   3'- -CGUCGuCGCGCUGCuuU------UGCGg--UGCA- -5'
6751 3' -54.2 NC_001875.2 + 1718 0.67 0.896846
Target:  5'- uGCuGCgGGCGCGAcacCGGucGCGCCGCc- -3'
miRNA:   3'- -CGuCG-UCGCGCU---GCUuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 2663 0.68 0.883055
Target:  5'- --uGCGGCGcCGGCG---GCGCCugGg -3'
miRNA:   3'- cguCGUCGC-GCUGCuuuUGCGGugCa -5'
6751 3' -54.2 NC_001875.2 + 2872 0.68 0.868336
Target:  5'- aGCAGCgguuggGGCGCGugGGAcgcauguugacGACGagaaaCACGUc -3'
miRNA:   3'- -CGUCG------UCGCGCugCUU-----------UUGCg----GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 3067 0.82 0.213947
Target:  5'- cGCAGCGGCGCGcCGggGuCGcCCACGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCuuUuGC-GGUGCa -5'
6751 3' -54.2 NC_001875.2 + 3118 0.69 0.843792
Target:  5'- cGCGGCGcagaccuGgGCGGCGAAgcccgcugcgcgGACGCgGCGUc -3'
miRNA:   3'- -CGUCGU-------CgCGCUGCUU------------UUGCGgUGCA- -5'
6751 3' -54.2 NC_001875.2 + 3209 0.66 0.946784
Target:  5'- uGCGGCGGCGguugGAUGgcGugGgCGCGUu -3'
miRNA:   3'- -CGUCGUCGCg---CUGCuuUugCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 3949 0.68 0.851126
Target:  5'- aGCuGCAGCGUGucaacaacGACGCCGCGc -3'
miRNA:   3'- -CGuCGUCGCGCugcuu---UUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 4284 0.76 0.449848
Target:  5'- uGCAGCAGCGCGcCGAucaaGCaCGCGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCUuuugCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 4574 0.71 0.700449
Target:  5'- cGCgAGCAGCcgcaugcccgacauGCGcACGAAGAgGCCGCGc -3'
miRNA:   3'- -CG-UCGUCG--------------CGC-UGCUUUUgCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 5103 0.69 0.827784
Target:  5'- gGCuGCGcGCGCuaaucGACGGAAAgGUCACGUc -3'
miRNA:   3'- -CGuCGU-CGCG-----CUGCUUUUgCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 5988 0.71 0.723868
Target:  5'- gGCAGgccCAGCGCGugcCGAAugGGgGCCACGUc -3'
miRNA:   3'- -CGUC---GUCGCGCu--GCUU--UUgCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 6452 0.67 0.903382
Target:  5'- cGUAGUAGCGCG-CGGuguuCGUCAgGUc -3'
miRNA:   3'- -CGUCGUCGCGCuGCUuuu-GCGGUgCA- -5'
6751 3' -54.2 NC_001875.2 + 6938 0.66 0.946784
Target:  5'- -gAGCAaCGCGuCGugcguGCGCCGCGa -3'
miRNA:   3'- cgUCGUcGCGCuGCuuu--UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 7016 0.68 0.868336
Target:  5'- cCGGCGGCGCGuaucUGAccuuuAGCGCCGCc- -3'
miRNA:   3'- cGUCGUCGCGCu---GCUu----UUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 7090 0.66 0.932371
Target:  5'- gGCAGCuacuacguGCGCGGCucGGACgGCgGCGa -3'
miRNA:   3'- -CGUCGu-------CGCGCUGcuUUUG-CGgUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.