miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 131523 0.73 0.578759
Target:  5'- uGCAGCGGCuggaaGCGGCGcAAAgcGCGCC-CGUg -3'
miRNA:   3'- -CGUCGUCG-----CGCUGC-UUU--UGCGGuGCA- -5'
6751 3' -54.2 NC_001875.2 + 131258 0.69 0.813781
Target:  5'- uGCGGCAGUuguGCGACGcGuugaacgacuugcacAACGCCACc- -3'
miRNA:   3'- -CGUCGUCG---CGCUGCuU---------------UUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 131069 0.66 0.921521
Target:  5'- aCAGCuuuAGCGcCGACGAAAucaACGUgCACGa -3'
miRNA:   3'- cGUCG---UCGC-GCUGCUUU---UGCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 130925 0.73 0.620387
Target:  5'- aCGGCAGUgGCGGCGGuuuGCGCCGUGUg -3'
miRNA:   3'- cGUCGUCG-CGCUGCUuu-UGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 130656 0.69 0.81021
Target:  5'- uGCGGUucAGCGUGGC-AAAGUGCCGCGa -3'
miRNA:   3'- -CGUCG--UCGCGCUGcUUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 130309 0.67 0.896846
Target:  5'- aUAGCAcGCGCcguuCGAGAGCGCC-CGc -3'
miRNA:   3'- cGUCGU-CGCGcu--GCUUUUGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 130115 0.76 0.468737
Target:  5'- gGCGGCGGCGCGAcCGGugucGCGCC-CGc -3'
miRNA:   3'- -CGUCGUCGCGCU-GCUuu--UGCGGuGCa -5'
6751 3' -54.2 NC_001875.2 + 130061 0.69 0.81021
Target:  5'- gGCGGCGGCgGCGGCGGcaugcucGugGUCACa- -3'
miRNA:   3'- -CGUCGUCG-CGCUGCUu------UugCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 129968 0.75 0.497809
Target:  5'- gGCGGCGGCgGCGGCGGcgGCGgCAUGc -3'
miRNA:   3'- -CGUCGUCG-CGCUGCUuuUGCgGUGCa -5'
6751 3' -54.2 NC_001875.2 + 128011 0.71 0.743882
Target:  5'- uGCGGCcGCGcCGGCGu--GCGCCgACGa -3'
miRNA:   3'- -CGUCGuCGC-GCUGCuuuUGCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 127960 0.73 0.589125
Target:  5'- gGCGGCucugaAGCGCGugGAGAuUGCgGCGg -3'
miRNA:   3'- -CGUCG-----UCGCGCugCUUUuGCGgUGCa -5'
6751 3' -54.2 NC_001875.2 + 127320 0.67 0.903382
Target:  5'- --cGCAGC-CGGCGGu-GCGCCGCu- -3'
miRNA:   3'- cguCGUCGcGCUGCUuuUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 126948 0.69 0.827784
Target:  5'- -gAGCAGCuGCGGCGcGAguuaaauaguuuGCGCCGCa- -3'
miRNA:   3'- cgUCGUCG-CGCUGCuUU------------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 126668 0.66 0.937423
Target:  5'- cGCcauGCAcGCGCuGACGAGcACGUUGCGg -3'
miRNA:   3'- -CGu--CGU-CGCG-CUGCUUuUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 126528 0.67 0.915722
Target:  5'- aGCAgGUAGCGCGcaAUGGAGugGUCGuCGg -3'
miRNA:   3'- -CGU-CGUCGCGC--UGCUUUugCGGU-GCa -5'
6751 3' -54.2 NC_001875.2 + 126321 0.67 0.896846
Target:  5'- aCGGCGGC-CGGCGuAAACuGCgCGCGUg -3'
miRNA:   3'- cGUCGUCGcGCUGCuUUUG-CG-GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 124880 0.7 0.763489
Target:  5'- -aAGCAGCGCGcCGuggcGAUGUCGCGg -3'
miRNA:   3'- cgUCGUCGCGCuGCuu--UUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 124806 0.66 0.944079
Target:  5'- uGCAcCAGCGUGGCGgcGcuaaaggucagauacGCGCCGCc- -3'
miRNA:   3'- -CGUcGUCGCGCUGCuuU---------------UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 124246 0.7 0.791963
Target:  5'- gGCGGCGGCacaaUGACGAcAGGCGgCGCGUu -3'
miRNA:   3'- -CGUCGUCGc---GCUGCU-UUUGCgGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 123335 0.67 0.896179
Target:  5'- uGCAGU-GCGCGGCGcccacacGGAcgGCGCCcgGCGUg -3'
miRNA:   3'- -CGUCGuCGCGCUGC-------UUU--UGCGG--UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.