miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6751 3' -54.2 NC_001875.2 + 34932 0.74 0.547927
Target:  5'- gGguGCGGCGUGAcaacaaccCGGAGcuguACGCCACGg -3'
miRNA:   3'- -CguCGUCGCGCU--------GCUUU----UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 4284 0.76 0.449848
Target:  5'- uGCAGCAGCGCGcCGAucaaGCaCGCGg -3'
miRNA:   3'- -CGUCGUCGCGCuGCUuuugCG-GUGCa -5'
6751 3' -54.2 NC_001875.2 + 110076 0.76 0.449848
Target:  5'- cGCAGagacgcuGCGCGugGAGGcCGCCACGc -3'
miRNA:   3'- -CGUCgu-----CGCGCugCUUUuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 49582 0.76 0.459241
Target:  5'- aGCAGCuGCGCGcCGAcGAGCGCUACc- -3'
miRNA:   3'- -CGUCGuCGCGCuGCU-UUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 83016 0.76 0.459241
Target:  5'- uCAGCuggaccGCGCGcaGCGAGuGCGCCACGUg -3'
miRNA:   3'- cGUCGu-----CGCGC--UGCUUuUGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 55314 0.76 0.468737
Target:  5'- cGCGGCAguggcGCGCGACGGugaugacGCGCCGCu- -3'
miRNA:   3'- -CGUCGU-----CGCGCUGCUuu-----UGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 57340 0.75 0.488026
Target:  5'- gGCAGCGcugcGCGCGGCGAAAcCGCaagUACGUg -3'
miRNA:   3'- -CGUCGU----CGCGCUGCUUUuGCG---GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 98803 0.75 0.497809
Target:  5'- cGC-GCGGCGCGGCGcc--CGCCGCGc -3'
miRNA:   3'- -CGuCGUCGCGCUGCuuuuGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 18161 0.75 0.507679
Target:  5'- uGCGGCGcGCGCGACGc---CGCCACuGUg -3'
miRNA:   3'- -CGUCGU-CGCGCUGCuuuuGCGGUG-CA- -5'
6751 3' -54.2 NC_001875.2 + 100905 0.76 0.440561
Target:  5'- cGCcGCAGCGCG-CGGAGACGCguCGc -3'
miRNA:   3'- -CGuCGUCGCGCuGCUUUUGCGguGCa -5'
6751 3' -54.2 NC_001875.2 + 109952 0.77 0.416938
Target:  5'- cGgAGCAGCGCGACGuguacgacaaguacaAGuuUGCCACGUa -3'
miRNA:   3'- -CgUCGUCGCGCUGC---------------UUuuGCGGUGCA- -5'
6751 3' -54.2 NC_001875.2 + 65780 0.77 0.378779
Target:  5'- gGCGGCGGCGCGuCGucguuGAGCGCCAg-- -3'
miRNA:   3'- -CGUCGUCGCGCuGCu----UUUGCGGUgca -5'
6751 3' -54.2 NC_001875.2 + 92749 0.79 0.301155
Target:  5'- uGCAGCAGCGCGuugGCGuauucguAAACGCCGCc- -3'
miRNA:   3'- -CGUCGUCGCGC---UGCu------UUUGCGGUGca -5'
6751 3' -54.2 NC_001875.2 + 113386 0.79 0.315644
Target:  5'- uCAGCGGCGCG-CGAuucgcGCGCCACGc -3'
miRNA:   3'- cGUCGUCGCGCuGCUuu---UGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 110747 0.78 0.354139
Target:  5'- uGCAGUuuaAGCGCGGCGAccgcCGCCGCGc -3'
miRNA:   3'- -CGUCG---UCGCGCUGCUuuu-GCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 37567 0.78 0.354139
Target:  5'- cGCGGCAucgaguggauGCGcCGGCGcGAGCGCCGCGg -3'
miRNA:   3'- -CGUCGU----------CGC-GCUGCuUUUGCGGUGCa -5'
6751 3' -54.2 NC_001875.2 + 66678 0.78 0.370439
Target:  5'- aCGGCAGCGgGAUGGGAAUGCugCACGUg -3'
miRNA:   3'- cGUCGUCGCgCUGCUUUUGCG--GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 75270 0.78 0.370439
Target:  5'- gGCGGCGGCGuCGGCGAugGCGUCgGCGa -3'
miRNA:   3'- -CGUCGUCGC-GCUGCUuuUGCGG-UGCa -5'
6751 3' -54.2 NC_001875.2 + 91449 0.78 0.370439
Target:  5'- aGCGGCGGCGCGugG---GCGCgCAUGUc -3'
miRNA:   3'- -CGUCGUCGCGCugCuuuUGCG-GUGCA- -5'
6751 3' -54.2 NC_001875.2 + 118029 0.78 0.370439
Target:  5'- cGCGacCAGUGCGACGgcAACGCCGCGc -3'
miRNA:   3'- -CGUc-GUCGCGCUGCuuUUGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.